NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28439.1 Public Mus musculus 17 Zfp677 23 108 98 CCDS HistoryNCBI Gene:210503Re-query CCDS DB by CCDS ID:28439.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28439.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056107.10 ENSMUSP00000052667.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056107.10Link to Ensembl Protein Viewer:ENSMUSP00000052667.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000056107Re-query CCDS DB by Protein ID:ENSMUSP00000052667
Original member Current member EBI ENSMUST00000162659.1 ENSMUSP00000125295.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162659.1Link to Ensembl Protein Viewer:ENSMUSP00000125295.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162659Re-query CCDS DB by Protein ID:ENSMUSP00000125295
Original member Current member NCBI NM_172486.2 NP_766074.2 Accepted alive Link to Nucleotide Sequence:NM_172486.2Link to Protein Sequence:NP_766074.2Re-query CCDS DB by Nucleotide ID:NM_172486Re-query CCDS DB by Protein ID:NP_766074Link to BLAST:NP_766074.2

Chromosomal Locations for CCDS 28439.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 21392522 21392551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 21393176 21393302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 21396840 21398587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1905 nt):
ATGACAGATTCTCCTGGAAATATGTCTCAGGGTCTGTTGGCATTCAAAGATGTGGCTGTGGAATTTTCCC
AAGAGGAGTGGGGATGCCTTGACTCTGCTCAGAGGTCTTTGTACATCAATGTGATGTTGGAGAATTACAA
CAACCTGGTCTCTGTGGAGAACTATTGTATACGTGATACTGTTGATCAACATGTGAATACAGAAAAAGAG
TCTTGTCAGTATAATGAGCTTGGCAAAATTCTTCATGAACACTTCAAATGTGCACTTTATAAAACAAGTA
TAACTATAGAAACCTCTAAAAACTACAGATGCTGTAGTGACAGGGATGTGTCTAATGACTCACCAAACGC
AGATAGACACAGAAGCACGCACACTGGAGAAGAACCGTACGAATCTAAACACTGTGAGAAAACTTTCAGT
TTGCGTTCCAACATTAGTCAAGATCAGAGACTCTATACTGCAAAGAAAGAGCACAGACAAGAAGAATATG
ATGAGCATTTCAGCTCTACACACAGACTGATGCAACAAATAAACTACATTGGAGAAAAACCACACCAGTG
TGGGAAATGTGGAAAATGCTTCAGTACTTCCTCGAATCTCACTGTACACCAGAGAATTCATACTGGAGAG
AAACCCTACAAGTGCAACCTTTGTGACAAATCTTTTTCCCAGAGCACAACTCTTAAAACACATCAAAGAC
TTCATACTGGGGAGAAGCCTTACAAATGCAGAGAATGTGGAATGTCGTTTCCTTACTTGTCATCCCTTAA
AGTCCATCAGAATTTGCATCCTGGAGCGAAGCCATACAAATGTAAGGAATGTGACAAATCCTTTACTATA
AAGTCAACTCTTATAAAACATCAGAGAAATCATACTGGAGAGAAACCCTACACGTGCAATGTTTGTGACA
GATCCTTTAGACAATGTGCAAATCTTAAAACACACCAAAGACTTCATACAGGAGAAAAACCTTACAAGTG
CAAGGAATGTGGAAAGGCATTTACTCAGTCCTCATCCCTTAAAAAACATCTGAATTTGCATACTGGAAAG
AAACCTTACAAATGTGAGGAATGTGACAAATCTTTTACCGAGAAGTCAACACTTACAACGCATAAAAGAA
TTCATACTGGAAAGAAACCCTATAAGTGCAACATTTGTGGCAAATCCTTTAACAGTTGTACAAATCTTAA
AACACATCAAACACTTCATACTGGGGAGAAACCTTACAAGTGCAAGGAATGTGGAAAGGCATTTCCTTAC
ATGTCATCCCTTAAAATACATCAGAATTTGCATCCTGGAGAGAAGCCTTATAAATGTAAGGAATGTGACA
AATCCTTTACTCTGAAGTCAAGTCTTAGAACACATCAGATAATTCATACTGGAGAGAAACCCTACAAGTG
CAACATTTGTGGCAAATCCTTTAACCAATGTACAAATCTTAAAACACATCAAAGACTTCATACTGGGGAG
AAACCTTATAAATGCAAAGAATGTGGAAAGTCATTTCATTACTGGTCATCCCTTAAAAGCCATCAGAATT
TGCATAGTGGAGAGAAGCCTTATAAATGTAAGGAATGTGACAAATCCTTTACTGAGAAGTCAACTCTTAT
AAAACATCAGAGAATTCACACAGGAAAGAAGCTCTACAAGTGCAACATTTGTGACAAATCCTTCACCTGG
TGTGCATCCCTTAAAACACATAAAAAGTTCCATACTGGAGAGAAACCTTACAAATGCAGAAAATGTGGAA
AGTCTTTTCCTCAGTTATCAACCCTTAAAAGACATCAGAAAATTCATGAAGACAAGGGACATACTGGGGA
GAAGCTTTACAAGTGCAATGACTGTGACAGGTCCTATTCCTACCATTCGTCATTTAGAAGGCATCAGAAA
ATTCATTCTTCATAG

Translation (634 aa):
MTDSPGNMSQGLLAFKDVAVEFSQEEWGCLDSAQRSLYINVMLENYNNLVSVENYCIRDTVDQHVNTEKE
SCQYNELGKILHEHFKCALYKTSITIETSKNYRCCSDRDVSNDSPNADRHRSTHTGEEPYESKHCEKTFS
LRSNISQDQRLYTAKKEHRQEEYDEHFSSTHRLMQQINYIGEKPHQCGKCGKCFSTSSNLTVHQRIHTGE
KPYKCNLCDKSFSQSTTLKTHQRLHTGEKPYKCRECGMSFPYLSSLKVHQNLHPGAKPYKCKECDKSFTI
KSTLIKHQRNHTGEKPYTCNVCDRSFRQCANLKTHQRLHTGEKPYKCKECGKAFTQSSSLKKHLNLHTGK
KPYKCEECDKSFTEKSTLTTHKRIHTGKKPYKCNICGKSFNSCTNLKTHQTLHTGEKPYKCKECGKAFPY
MSSLKIHQNLHPGEKPYKCKECDKSFTLKSSLRTHQIIHTGEKPYKCNICGKSFNQCTNLKTHQRLHTGE
KPYKCKECGKSFHYWSSLKSHQNLHSGEKPYKCKECDKSFTEKSTLIKHQRIHTGKKLYKCNICDKSFTW
CASLKTHKKFHTGEKPYKCRKCGKSFPQLSTLKRHQKIHEDKGHTGEKLYKCNDCDRSYSYHSSFRRHQK
IHSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH