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Report for CCDS20413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20413.1 Public Mus musculus 6 Cpne9 23 108 98 CCDS HistoryNCBI Gene:211232Re-query CCDS DB by CCDS ID:20413.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20413.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041203.5 ENSMUSP00000044416.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041203.5Link to Ensembl Protein Viewer:ENSMUSP00000044416.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000041203Re-query CCDS DB by Protein ID:ENSMUSP00000044416
Original member Current member NCBI NM_170673.3 NP_733773.2 Accepted alive Link to Nucleotide Sequence:NM_170673.3Link to Protein Sequence:NP_733773.2Re-query CCDS DB by Nucleotide ID:NM_170673Re-query CCDS DB by Protein ID:NP_733773Link to BLAST:NP_733773.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_733773.2 553 Q1RLL3 553 99.8192% 0 1

Chromosomal Locations for CCDS 20413.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113282474 113282541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113283047 113283087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113283196 113283242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113283350 113283453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113283946 113283982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113284205 113284207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113284385 113284461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113289985 113290048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113290167 113290270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113290405 113290509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113292038 113292079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113292366 113292441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113292522 113292575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113293003 113293064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113293709 113293755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113294612 113294793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113295026 113295153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113300563 113300665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113301640 113301697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113302049 113302122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113304436 113304621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGTCTCTCAGCGGAGCCTCGGAGCGTAGCGTCCCGGCCACCAAGATTGAAATTACTGTGTCGTGCCGGA
ATCTGCTAGACCTGGATACATTCTCCAAGTCGGACCCCATGGTGGTGCTTCACACGCAGAGCCGGGCCAG
CCAGGAGTGGCGGGAGTTCGGACGAACCGAGGTGATTGACAACACACTGAATCCAGACTTCGTGCGCAAA
TTCGTTCTCGACTATTTCTTTGAGGAAAAGCAAAATCTCCGCTTCGATGTGTACAACGTCGACTCTAAAG
CCAATATCTCCAAACCGAAGGATTTCCTGGGACAAGCATTCCTGGCCCTGGGAGAGGTGATTGGAGGCCA
GGGCAGCCGTGTGGAGCGACCTCTTACGGGTGTGCCAGGAAAGAAGTGTGGGACCATACTGCTGACCGCC
GAGGAGCTGAGCAACTGCAGGGACATTGCCACCATGCAGCTGTGTGCAAACAAGCTGGACAAAAAGGACT
TCTTTGGGAAGTCAGACCCTTTCCTTGTGTTCTACAGGAGCAATGAAGATGGCACGTTCACCATCTGCCA
CAAGACAGAGGTTGTGAAAAACACACTGAACCCAGTATGGCAGCCCTTCAGCATCCCTGTGCGGGCACTG
TGCAACGGAGACTATGACAGAACAGTGAAGATCGACGTATATGACTGGGACCGAGATGGAAGCCACGACT
TCATTGGCGAGTTCACAACCAGCTACCGGGAGCTGAGCAAGGCCCAGAATCAGTTCACAGTGTACGAGGT
ACTTAACCCTCGGAAGAAATGCAAGAAGAAGAAATATACCAACTCGGGGACCGTGACGCTCCTTTCCTTC
TCTGTGGACTCAGAATTCACTTTTGTGGATTACATCAAGGGAGGGACACAGCTGAACTTCACCGTAGCTA
TTGACTTCACTGCTTCCAATGGGAATCCCCTGCAGCCTACGTCGCTGCACTACATGAGTCCCTACCAGCT
CAGCGCCTATGCCATGGCCCTCAAGGCAGTGGGAGAGATCATCCAGGACTACGACAGTGACAAGCTCTTC
CCAGCCTATGGTTTTGGGGCCAAGCTGCCCCCAGAGGGGCGGATCTCCCACCAGTTCCCCCTGAACAATA
ACGATGAAGACCCCAACTGTGCAGGCATTGAGGGTGTGCTAGAGAGTTACTTCCAGAGTCTGCGCACAGT
GCAGCTCTATGGGCCCACTTACTTTGCACCTGTCATCAACCAGGTGGCCAGGGCTGCAGCCAAAATCTCG
GATGGTTCCCAGTACTACGTTCTGCTCATTATCACTGACGGCGTCATCTCCGACATGACACAGACCAAAG
AGGCCATCGTCAGTGCCTCCTCACTGCCCATGTCTATCATTATTGTCGGGGTCGGACCTGCCATGTTTGA
GGCAATGGAAGAGCTGGATGGTGATGATGTACGTGTATCCTCCAGGGGACGCTATGCAGAGCGGGACATC
GTTCAGTTTGTCCCATTCCGAGATTATGTTGACCGATCGGGGAACCAGGTGCTGAGCATGGCCCGACTGG
CCAAGGATGTACTAGCTGAGATTCCTGAACAGTTGCTCTCCTATATGCGCACCAGGGACATCCAGCCTCG
ACCTCCTCCCCCTGCGAGCCCCAACCCAACCCCAGCCCCAGAACAGCCCTGA

Translation (553 aa):
MSLSGASERSVPATKIEITVSCRNLLDLDTFSKSDPMVVLHTQSRASQEWREFGRTEVIDNTLNPDFVRK
FVLDYFFEEKQNLRFDVYNVDSKANISKPKDFLGQAFLALGEVIGGQGSRVERPLTGVPGKKCGTILLTA
EELSNCRDIATMQLCANKLDKKDFFGKSDPFLVFYRSNEDGTFTICHKTEVVKNTLNPVWQPFSIPVRAL
CNGDYDRTVKIDVYDWDRDGSHDFIGEFTTSYRELSKAQNQFTVYEVLNPRKKCKKKKYTNSGTVTLLSF
SVDSEFTFVDYIKGGTQLNFTVAIDFTASNGNPLQPTSLHYMSPYQLSAYAMALKAVGEIIQDYDSDKLF
PAYGFGAKLPPEGRISHQFPLNNNDEDPNCAGIEGVLESYFQSLRTVQLYGPTYFAPVINQVARAAAKIS
DGSQYYVLLIITDGVISDMTQTKEAIVSASSLPMSIIIVGVGPAMFEAMEELDGDDVRVSSRGRYAERDI
VQFVPFRDYVDRSGNQVLSMARLAKDVLAEIPEQLLSYMRTRDIQPRPPPPASPNPTPAPEQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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