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Report for CCDS21273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21273.1 Public Mus musculus 7 Nomo1 23 108 98 CCDS HistoryNCBI Gene:211548Re-query CCDS DB by CCDS ID:21273.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21273.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033121.6 ENSMUSP00000033121.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033121.6Link to Ensembl Protein Viewer:ENSMUSP00000033121.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000033121Re-query CCDS DB by Protein ID:ENSMUSP00000033121
Original member Current member NCBI NM_153057.4 NP_694697.3 Accepted alive Link to Nucleotide Sequence:NM_153057.4Link to Protein Sequence:NP_694697.3Re-query CCDS DB by Nucleotide ID:NM_153057Re-query CCDS DB by Protein ID:NP_694697Link to BLAST:NP_694697.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694697.3 1214 Q6GQT9 1214 100% 0 0

Chromosomal Locations for CCDS 21273.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 46033832 46033972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46037559 46037648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46038543 46038588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46041469 46041569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46042532 46042638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46044231 46044303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46045261 46045413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46045849 46045986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46046909 46046998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46050270 46050375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46050546 46050696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46054502 46054676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46056595 46056736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46057077 46057208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46058416 46058552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46060879 46060966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46061769 46061832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46062967 46063062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46066162 46066380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46066460 46066542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46068379 46068538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46068672 46068798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46069923 46070036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46070775 46070902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46072498 46072639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46076075 46076158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46078026 46078136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46079491 46079592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46081395 46081514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46083235 46083327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46083603 46083734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3645 nt):
ATGCGTGCGGGCCGGTGTGCCGCGGCGCTGCTGCTGCTGCTACTGAGCGGCGCGGGGCGCGCGATCGGCT
CCGAGGACATCGTGGTAGGCTGCGGGGGTTTCGTGAAGTCGGACGTGGAGATCAACTACTCGCTCATCGA
GATAAAGTTATACACCAAGCATGGGACTTTGAAATATCAGACGGACTGTGCTCCTAACAACGGCTACTTT
ATGATCCCCTTGTATGATAAGGGGGATTTCATCCTGAAGATCGAACCTCCTCTGGGCTGGAGTTTTGAGC
CAACCAACGTGGAGCTGCGAGTGGATGGTGTGAGCGACATCTGCACGAAGGGCGGGGACATCAACTTCCT
GTTCACTGGCTTCTCTGTGAATGGCAAGGTCCTCAGCAAAGGGCAGCCCCTGGGCCCAGCAGGAGTTCAG
GTATCCCTGAGAAGCACCGGTGCTGACTCGAAGATCCAGTCTACAGTCACGCAGCCTGGCGGAAAGTTTG
CGTTTTTCAAAGTTCTTCCTGGAGATTATGAAATCCTTGCAACTCACCCGACCTGGGCGCTGAAGGAGGC
AAGTACCACGGTGCGTGTGACGAACTCGAATGCTAACGCAGCTGGTCCCCTCATAGTGGCTGGCTATAAT
GTGTCCGGCTCTGTCCGCAGTGACGGGGAGCCCATGAAAGGGGTGAAGTTTCTTCTCTTTTCTTCTTTAG
TGAACAAAGAGGATGTCCTGGGCTGCAATGTGTCCCCAGTGTCCGGGTTCCAGCCCCCAGATGAGAGCCT
GGTTTATCTGTGCTATGCGGTCTCCAAAGAAGACGGCTCATTTTCTTTCTATTCCTTGCCGAGTGGGGGC
TACACTGTGGTGCCCTTCTACCGAGGAGAAAGGATCACCTTCGACGTGGCGCCCTCCCGGCTTGACTTCA
CGGTGGAGCACGACAGCCTGAGAATCGAGCCTGTATTCCACGTCATGGGCTTCTCTGTCACCGGGAGAGT
CTTGAATGGACCTGACGGAGAAGGCGTCCCAGAGGCTGTGGTCACCCTGAACAACCAGATTAAAGTCAAA
ACGAAGGCTGACGGCTCCTTCCGCCTGGAGAACATAACGACAGGGACATACACCATCCACGCTCAGAAGG
AGCACCTCTACTTCGAGATGGTCACCATCAAAATTGCCCCCAACACCCCACAGCTGGCTGACCTCATCGC
TACAGGGTTCAGCATCTGTGGTCAGATCGCCATCGTCCGCTCCCCCGACACCATCAAGCAGATGAGTAAA
TACAGAGTGGTCCTGTCCTCCCAAGACAAGGACAAGGCTTTGCTCACTGTGGACAGCGATGCCCATGGAT
CATTTTGCTTTAAAGCAAAACCAGGGGCCTACAAAGTCCAGGTGGTGGTACCCGAGGCTGAGACCAGAGC
AGGGCTGATGTTGAAGCCGCAGGTATTCCCCCTCACTGTGACCAACAGGCCTGTGATGGATGTGGCCTTC
GTGCAGTTTCTGGCATCGGTTTCCGGGAAAGTCTCCTGTCTGGATACCTGCGGTGACCTGTTGGTGACCC
TGCAGTCCCTGAGCCGCCAGGGTGAGAAACGCAGCCTCCAGCTCTCAGGCAAAGTCAACTCCATGACTTT
CACCTTTGACAAAGTTCTGCCTGGGAGATACAAAATAAGCATCATGCATGAGGACTGGTGCTGGAGGAAC
AAGAGTCTGGAAGTGGAAGTGCTGGAGGACGACGTGTCTGCGGTGGAGTTCAGGCAGACCGGTTACATGC
TGCGCTGCGCACTCTCACACGCCATCACTCTGGAATTTCATCAGGACGGAAATGGCCCTGAAAATGTGGG
GATTTACAATCTCTCCAGGGGAGTGAACCGCTTCTGCCTGTCCAAGCCTGGTGTGTACAAAGTGACTCCC
CGCTCCTGCCACCGGTTTGAGCAAGCCTTTTACACCTATGACACGTCTTCACCCAGTATCCTGACGCTGA
CAGCCATTCGTCACCATGTTCTTGGAACAATCATTACTGACAAAATGATGGACGTCACAGTGACTATCAA
GTCTTCCATCGACAGCGAGCCAGCCTTGGTCTTGGGACCTCTGAAGTCTGCACAGGAGCTGCGGAGGGAA
CAGCAGCTGGCAGAGATCGAGACTCGCAGGCAGGAGAGGGAGAAGAATGGCAAAGAAGAGGGCGAAGAAG
GCAGGGCCCGGCCTCCTGGGCAGGAGATGGTGGATGAGTTACAGGGCCCCTTCTCCTACGACTTCTCCTA
CTGGGCCCGGTCTGGAGAGAAAATCACTGTTACACCCTCGTCCAAAGAGCTCCTCTTTTATCCCCCATCC
ATGGAAGCCACTGTCAGTGGAGAAAGCTGTCCAGGGAAGTTAATTGAGATCCATGGGAAGGCGGGCTTGT
TCCTGGAAGGCCAGATTCACCCAGAGCTGGAGGGAGTCGAGATTGTCATCAGCGAGAAGGGAGCAAGTTC
ACCCTTGATCACTGTCTTCACCGATGACAAAGGTGCCTACAGTGTTGGTCCCCTACACAGTGACCTGGAG
TATACTGTGAACTCACAGAAGGAGGGCTACGTGCTGACTGCCGTGGAAGGAACCGTGGGAGACTTCAAGG
CTTATGCCTTGGCCGGCGTGAGCTTCGAGATTAAAGCTGAAGACGACCAGCCGCTCCCTGGGGTCCTCTT
ATCCCTCAGTGGTGGCGTGTTTCGTTCCAACCTCCTGACCCAAGACAACGGCATTCTGACTTTCTCAAAC
CTGAGCCCTGGACAGTACTACTTTAAACCCATGATGAAGGAGTTCCGCTTTGAGCCATCCTCACAGATGA
TAGAAGTGCAGGAGGGGCAGAACCTGAGGATCACCATCACTGGCTTTCGAACTGCCTACAGCTGCTACGG
CACTGTGTCGTCTTTAAATGGAGAGCCAGAGCAGGGTGTCGCGGTGGAGGCTGTGGGGCAGAAAGACTGC
AGCATCTATGGAGAAGACACGGTGACAGACGAGGAGGGGAAGTTCCGGTTACGTGGGCTGCTGCCAGGGT
GCATGTACCACGTGCAGCTGAAGGCAGAAGGCAATGACCACATCGAGCGGGCGCTGCCCCACCACCGGGT
GATTGAGGTTGGGAACAATGACGTGGATGACGTAAACATCATAGTTTTCCGGCAGATCAACCAGTTTGAC
CTGAGTGGAAACGTAATCACTTCCTCCGAGTATCTGTCTACCTTGTGGGTGAAGCTGTACAAAAGCGAGA
GTCTCGACAACCCCATCCAGACGGTGTCTCTGGGCCAGTCGCTCTTCTTCCACTTCCCACCGCTGCTCCG
AGATGGCGAGAACTATGTGGTGCTGCTGGACACCACGCTCCCCAGATCCCAGTACGACTACGTCCTGCCG
CAAGTCTCTTTCACTGCAGTGGGCTACCACAAGCACATCACTCTGGTTTTCAGTCCCACGAGGAAGCTCC
CTGAACAAGACATTGCGCAGGGGTCCTATATTGCCCTGCCTCTGACGCTGCTGCTCCTGTTGGCGGGCTA
CAACCATGACAAGCTCATTCCTTTGCTGCTGCAGCTGACGAGTCGTCTTCAGGGAGTCAGAGCCCTTGGC
CAGGCGGCCTCTGACAGCAGCGGCCCAGAAGACATGAAGAGACAAACCAAGAAACAGAAGACCAGACGCA
CGTGA

Translation (1214 aa):
MRAGRCAAALLLLLLSGAGRAIGSEDIVVGCGGFVKSDVEINYSLIEIKLYTKHGTLKYQTDCAPNNGYF
MIPLYDKGDFILKIEPPLGWSFEPTNVELRVDGVSDICTKGGDINFLFTGFSVNGKVLSKGQPLGPAGVQ
VSLRSTGADSKIQSTVTQPGGKFAFFKVLPGDYEILATHPTWALKEASTTVRVTNSNANAAGPLIVAGYN
VSGSVRSDGEPMKGVKFLLFSSLVNKEDVLGCNVSPVSGFQPPDESLVYLCYAVSKEDGSFSFYSLPSGG
YTVVPFYRGERITFDVAPSRLDFTVEHDSLRIEPVFHVMGFSVTGRVLNGPDGEGVPEAVVTLNNQIKVK
TKADGSFRLENITTGTYTIHAQKEHLYFEMVTIKIAPNTPQLADLIATGFSICGQIAIVRSPDTIKQMSK
YRVVLSSQDKDKALLTVDSDAHGSFCFKAKPGAYKVQVVVPEAETRAGLMLKPQVFPLTVTNRPVMDVAF
VQFLASVSGKVSCLDTCGDLLVTLQSLSRQGEKRSLQLSGKVNSMTFTFDKVLPGRYKISIMHEDWCWRN
KSLEVEVLEDDVSAVEFRQTGYMLRCALSHAITLEFHQDGNGPENVGIYNLSRGVNRFCLSKPGVYKVTP
RSCHRFEQAFYTYDTSSPSILTLTAIRHHVLGTIITDKMMDVTVTIKSSIDSEPALVLGPLKSAQELRRE
QQLAEIETRRQEREKNGKEEGEEGRARPPGQEMVDELQGPFSYDFSYWARSGEKITVTPSSKELLFYPPS
MEATVSGESCPGKLIEIHGKAGLFLEGQIHPELEGVEIVISEKGASSPLITVFTDDKGAYSVGPLHSDLE
YTVNSQKEGYVLTAVEGTVGDFKAYALAGVSFEIKAEDDQPLPGVLLSLSGGVFRSNLLTQDNGILTFSN
LSPGQYYFKPMMKEFRFEPSSQMIEVQEGQNLRITITGFRTAYSCYGTVSSLNGEPEQGVAVEAVGQKDC
SIYGEDTVTDEEGKFRLRGLLPGCMYHVQLKAEGNDHIERALPHHRVIEVGNNDVDDVNIIVFRQINQFD
LSGNVITSSEYLSTLWVKLYKSESLDNPIQTVSLGQSLFFHFPPLLRDGENYVVLLDTTLPRSQYDYVLP
QVSFTAVGYHKHITLVFSPTRKLPEQDIAQGSYIALPLTLLLLLAGYNHDKLIPLLLQLTSRLQGVRALG
QAASDSSGPEDMKRQTKKQKTRRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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