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Report for CCDS23419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23419.1 Public Mus musculus 9 Spsb4 23 108 98 CCDS HistoryNCBI Gene:211949Re-query CCDS DB by CCDS ID:23419.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23419.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055433.4 ENSMUSP00000057849.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055433.4Link to Ensembl Protein Viewer:ENSMUSP00000057849.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000055433Re-query CCDS DB by Protein ID:ENSMUSP00000057849
Original member Current member NCBI NM_145134.3 NP_660116.1 Accepted alive Link to Nucleotide Sequence:NM_145134.3Link to Protein Sequence:NP_660116.1Re-query CCDS DB by Nucleotide ID:NM_145134Re-query CCDS DB by Protein ID:NP_660116Link to BLAST:NP_660116.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660116.1 273 Q8R5B6-1 273 100% 0 0

Chromosomal Locations for CCDS 23419.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 96944577 96944704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96995575 96996268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGGGTCAGAAGCTCTCTGGGAGCCTCAAGTCTGTGGAGGTGCGAGAGCCAGCGCTTCGGCCAGCTAAGC
GGGAGCTCCGCGGCTTAGAACCTGGGCGACCGGCACGTCTAGACCAGCTGCTGGACATGCCTGCGGCAGG
GTTGGCAGTACAGCTGAGACACGCGTGGAACCCCGAGGACCGCTCCCTCAATGTCTTTGTCAAGGATGAC
GACCGCCTCACCTTCCACCGGCACCCAGTAGCCCAGAGCACAGATGGCATCCGTGGCAAGGTGGGCCATG
CCCGGGGTCTGCACGCATGGCAGATCCATTGGCCCGCTAGGCAGCGGGGCACCCACGCTGTGGTGGGCGT
GGCCACGGCCCGAGCCCCTTTGCACTCTGTGGGTTACACCGCACTGGTGGGCAGTGACTCCGAGTCGTGG
GGCTGGGACCTGGGTCGCAGCCGCCTCTACCACGACGGCAAGAACCGGCCTGGGGTGGCATACCCAGCCT
TCCTGGGGCCAGATGAAGCCTTTGCTCTGCCAGATTCCTTATTGGTCGTACTGGACATGGACGAGGGCAC
GCTCAGCTTCATCGTGGATGGCCAGTACCTGGGCGTGGCCTTCCGTGGCCTCAAGGGCAAGAAACTATAC
CCGGTGGTGAGTGCTGTGTGGGGTCACTGCGAAGTCACCATGCGCTACATCAACGGCCTTGACCCTGAGC
CTCTGCCGCTGATGGACCTGTGCCGGCGATCCATCCGCTCAGCCCTGGGCCGACAGCGCCTGCGTGACAT
CGGCTCCCTGCCCCTGCCTCAGTCTCTGAAAAACTACCTGCAGTACCAGTGA

Translation (273 aa):
MGQKLSGSLKSVEVREPALRPAKRELRGLEPGRPARLDQLLDMPAAGLAVQLRHAWNPEDRSLNVFVKDD
DRLTFHRHPVAQSTDGIRGKVGHARGLHAWQIHWPARQRGTHAVVGVATARAPLHSVGYTALVGSDSESW
GWDLGRSRLYHDGKNRPGVAYPAFLGPDEAFALPDSLLVVLDMDEGTLSFIVDGQYLGVAFRGLKGKKLY
PVVSAVWGHCEVTMRYINGLDPEPLPLMDLCRRSIRSALGRQRLRDIGSLPLPQSLKNYLQYQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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