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Report for CCDS15274.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15274.1 Public Mus musculus 1 Pm20d1 23 108 98 CCDS HistoryNCBI Gene:212933Re-query CCDS DB by CCDS ID:15274.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15274.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048660.11 ENSMUSP00000046079.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048660.11Link to Ensembl Protein Viewer:ENSMUSP00000046079.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000048660Re-query CCDS DB by Protein ID:ENSMUSP00000046079
Original member Current member EBI ENSMUST00000112393.8 ENSMUSP00000108012.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112393.8Link to Ensembl Protein Viewer:ENSMUSP00000108012.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112393Re-query CCDS DB by Protein ID:ENSMUSP00000108012
Original member Current member NCBI NM_001357478.1 NP_001344407.1 Accepted alive Link to Nucleotide Sequence:NM_001357478.1Link to Protein Sequence:NP_001344407.1Re-query CCDS DB by Nucleotide ID:NM_001357478Re-query CCDS DB by Protein ID:NP_001344407Link to BLAST:NP_001344407.1
Original member Current member NCBI NM_178079.3 NP_835180.2 Accepted alive Link to Nucleotide Sequence:NM_178079.3Link to Protein Sequence:NP_835180.2Re-query CCDS DB by Nucleotide ID:NM_178079Re-query CCDS DB by Protein ID:NP_835180Link to BLAST:NP_835180.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344407.1 503 Q8C165 503 100% 0 0
NP_835180.2 503 Q8C165 503 100% 0 0

Chromosomal Locations for CCDS 15274.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 131797418 131797586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131798596 131798682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131801094 131801326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131801726 131801812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131802301 131802434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131802720 131802839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131804052 131804127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131804587 131804648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131804893 131804971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131806899 131806970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131812035 131812203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131813891 131813990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131815987 131816110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGGCTGAGCTACTTGCTAGCTTGCCCGCCTGGGCAGCTGTGCTCCTTCTCTTTTTCGCTACGGTCTCCG
GATCCACTGGCCCTAGAAGCAGGGAAAATCGGGGGGCGTCCCGGATCCCTTCCCAGTTCAGCGAGGAGGA
GCGTGTCGCTATAAAAGAGGCGCTGAAAGGTGCCATCCAGATTCCCACAGTGTCTTTCAGCCACGAGGAA
TCCAACACCACAGCCCTTGCTGAGTTTGGAGAATATATCCGCAAAGCCTTCCCTACAGTGTTCCACAGCA
GCCTTGTCCAACATGAAGTCGTGGCAAAGTATAGCCACCTGTTCACCATCCAAGGCTCAGACCCCAGTTT
GCAGCCCTACATGCTGATGGCTCACATTGATGTGGTTCCTGCCCCGGAAGAAGGATGGGAGGTGCCCCCG
TTCTCAGGCCTGGAACGCAATGGCTTCATCTATGGCCGGGGTGCGCTGGACAACAAAAACTCTGTGATGG
CGATCCTGCATGCTTTGGAGCTCCTGTTGATCAGAAACTACAGCCCCAAAAGATCTTTCTTCATTGCTTT
GGGCCATGATGAGGAGGTGTCCGGGGAAAAGGGGGCTCAGAAGATCTCAGCACTCTTACAGGCAAGGGGT
GTCCAGCTAGCCTTCCTTGTGGATGAAGGGAGCTTTATCTTGGAAGGCTTCATTCCAAACCTCGAGAAGC
CAGTTGCCATGATTTCAGTCACTGAGAAGGGTGCCCTTGACCTCATGCTGCAAGTAAACATGACTCCAGG
CCACTCTTCAGCTCCCCCAAAGGAGACAAGCATTGGCATTCTTTCTGCCGCTGTCAGCCGACTGGAGCAG
ACACCAATGCCGAATATGTTTGGAGGAGGGCCATTGAAGAAGACAATGAAGCTACTGGCAAATGAGTTTT
CCTTCCCTATCAATATAGTCTTGAGAAACCTGTGGCTATTTCATCCCATTGTGAGCAGGATAATGGAGAG
GAACCCCATAACAAATGCGCTGGTCCGAACTACCACAGCCCTCACCATGTTCAATGCAGGAATCAAGGTG
AATGTCATCCCTCCATTGGCTCAGGCTACAATCAACTGCCGAATTCACCCTTCGCAGACAGTACATGAGG
TCCTAGAACTTGTCAAGAACACCGTGGCTGATGACAGAGTCCAGCTGCATGTGTTGAGATCCTTTGAACC
CCTGCCCATCAGCCCCTCTGATGACCAGGCCATGGGCTACCAGCTGCTTCAAGAGACCATACGATCTGTC
TTCCCGGAAGTCGACATCGTCGTCCCCGGTATTTGTATTGCCAATACGGACACCCGACACTATGCCAACA
TCACCAATGGCATGTACCGGTTCAACCCCCTTCCCCTGAACCCTCAGGACTTCAGTGGTGTCCATGGAAT
CAATGAGAAAGTTTCCGTTCAGAACTACCAGAACCAGGTGAAGTTCATCTTTGAGTTCATCCAAAATGCC
GACACTTACAAAGAGCCAGTTCCTCATCTGCATGAACTATGA

Translation (503 aa):
MAELLASLPAWAAVLLLFFATVSGSTGPRSRENRGASRIPSQFSEEERVAIKEALKGAIQIPTVSFSHEE
SNTTALAEFGEYIRKAFPTVFHSSLVQHEVVAKYSHLFTIQGSDPSLQPYMLMAHIDVVPAPEEGWEVPP
FSGLERNGFIYGRGALDNKNSVMAILHALELLLIRNYSPKRSFFIALGHDEEVSGEKGAQKISALLQARG
VQLAFLVDEGSFILEGFIPNLEKPVAMISVTEKGALDLMLQVNMTPGHSSAPPKETSIGILSAAVSRLEQ
TPMPNMFGGGPLKKTMKLLANEFSFPINIVLRNLWLFHPIVSRIMERNPITNALVRTTTALTMFNAGIKV
NVIPPLAQATINCRIHPSQTVHEVLELVKNTVADDRVQLHVLRSFEPLPISPSDDQAMGYQLLQETIRSV
FPEVDIVVPGICIANTDTRHYANITNGMYRFNPLPLNPQDFSGVHGINEKVSVQNYQNQVKFIFEFIQNA
DTYKEPVPHLHEL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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