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Report for CCDS19815.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19815.1 Public Mus musculus 5 Psmg3 23 108 98 CCDS HistoryNCBI Gene:66506Re-query CCDS DB by CCDS ID:19815.1Re-query CCDS DB by GeneID:66506See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19815.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031531.13 ENSMUSP00000031531.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031531.13Link to Ensembl Protein Viewer:ENSMUSP00000031531.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031531Re-query CCDS DB by Protein ID:ENSMUSP00000031531
Original member Current member EBI ENSMUST00000182602.1 ENSMUSP00000138161.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182602.1Link to Ensembl Protein Viewer:ENSMUSP00000138161.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182602Re-query CCDS DB by Protein ID:ENSMUSP00000138161
Original member Current member NCBI NM_001356963.1 NP_001343892.1 Accepted alive Link to Nucleotide Sequence:NM_001356963.1Link to Protein Sequence:NP_001343892.1Re-query CCDS DB by Nucleotide ID:NM_001356963Re-query CCDS DB by Protein ID:NP_001343892Link to BLAST:NP_001343892.1
Original member Current member NCBI NM_025604.4 NP_079880.1 Accepted alive Link to Nucleotide Sequence:NM_025604.4Link to Protein Sequence:NP_079880.1Re-query CCDS DB by Nucleotide ID:NM_025604Re-query CCDS DB by Protein ID:NP_079880Link to BLAST:NP_079880.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343892.1 122 Q9CZH3 122 100% 0 0
NP_079880.1 122 Q9CZH3 122 100% 0 0

Chromosomal Locations for CCDS 19815.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 139823921 139824073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139826128 139826343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (369 nt):
ATGGAAGACAAACCACTGGTAGTATCTAAACAGAAGACAGAAGTGGTGTGCGGTGTGCCCACCCAGGTGG
TCTGCACGGCCTTCAGCAGCCACATCCTAGTTGTGGTGACCCAGTTCGGGAAGATGGGTACGCTAGTGTC
CTTGGAGCCCAGCAATGTGGCCAATGACATCAGCAAGCCAGTGCTCACCACGAGAGTCCTCCTCGGGCAG
GACGAGCCTCTCATCCATGTCTTTGCAAAGAACCTGGTAGCATTTGTGTCGCAAGAAGCAGGAAACAGAG
CCGTCCTGCTGGCCATGGCTGTGAAAGACAAGAGCATGGAGAGGCTCAAGGCATTGAAGGAAGTGATCCG
GCTGTGCCAGGTGTGGTGA

Translation (122 aa):
MEDKPLVVSKQKTEVVCGVPTQVVCTAFSSHILVVVTQFGKMGTLVSLEPSNVANDISKPVLTTRVLLGQ
DEPLIHVFAKNLVAFVSQEAGNRAVLLAMAVKDKSMERLKALKEVIRLCQVW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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