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Report for CCDS51882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51882.1 Public Mus musculus 6 Depp1 23 108 98 CCDS HistoryNCBI Gene:213393Re-query CCDS DB by CCDS ID:51882.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51882.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067354.9 ENSMUSP00000070203.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067354.9Link to Ensembl Protein Viewer:ENSMUSP00000070203.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000067354Re-query CCDS DB by Protein ID:ENSMUSP00000070203
Original member Current member EBI ENSMUST00000178241.3 ENSMUSP00000136165.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178241.3Link to Ensembl Protein Viewer:ENSMUSP00000136165.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178241Re-query CCDS DB by Protein ID:ENSMUSP00000136165
Original member Current member NCBI NM_001166580.1 NP_001160052.1 Accepted alive Link to Nucleotide Sequence:NM_001166580.1Link to Protein Sequence:NP_001160052.1Re-query CCDS DB by Nucleotide ID:NM_001166580Re-query CCDS DB by Protein ID:NP_001160052Link to BLAST:NP_001160052.1
Original member Current member NCBI NM_145980.2 NP_666092.1 Accepted alive Link to Nucleotide Sequence:NM_145980.2Link to Protein Sequence:NP_666092.1Re-query CCDS DB by Nucleotide ID:NM_145980Re-query CCDS DB by Protein ID:NP_666092Link to BLAST:NP_666092.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160052.1 205 Q8K2F3 205 100% 0 0
NP_666092.1 205 Q8K2F3 205 100% 0 0

Chromosomal Locations for CCDS 51882.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116651698 116652315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGAGGTCCCGGCTTCTGCTGCCCGTGCCCCATTTGCCAACGATTCGGGAAATGTCAGAAGAGCTGTCAC
ATGGGGCAGCTGGGCAGGAACCCCCAGCGTCCCCCAGCCTGGATGACTACGTCAGGTGTATCTGTCAGCT
GGCACAGCCCACCTCAGTGCTGGACAAGGTCACAGCCCAGAGCCGTCCCAACAGACCCTCCCGGCCAGCC
TGGACTCGAGAGAAGAGGCGCCAGGCCGAGTCTCCAGGAGACAGCTCTCTTTGCGTCAGCAGCCTGCAGC
CCACACTGCCCTCTCCCGGCACTGACAACCCTCTGGACTGGCTCTTTGGGAAGTCACAGGGAGAGCAGGC
AGATGGGAGAGGTCGACCCAACAGGACTGGTTCTTCAGATCCCTGGGATGTGCCCAGACAGATGGGCAAG
GACACGGGGAGACTCTGTGAGGCCAGGGTACCTGAGCACTCTCTGGGAAGAAAACCAGGGCCCAGGCACC
AGACCTCCGACCTGAAAAGCTGGACTTCTAGAAAGTCCTGCCGGGCCTTAGCGTCCGTCTCCAGCTCTCG
CCCCAGCAGTATCCTAGGTACTCTCTATTTGCACCTCCCAGTGATCCATGAACTCTAA

Translation (205 aa):
MRSRLLLPVPHLPTIREMSEELSHGAAGQEPPASPSLDDYVRCICQLAQPTSVLDKVTAQSRPNRPSRPA
WTREKRRQAESPGDSSLCVSSLQPTLPSPGTDNPLDWLFGKSQGEQADGRGRPNRTGSSDPWDVPRQMGK
DTGRLCEARVPEHSLGRKPGPRHQTSDLKSWTSRKSCRALASVSSSRPSSILGTLYLHLPVIHEL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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