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Report for CCDS53172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53172.1 Public Mus musculus X Tent5d 23 108 98 CCDS HistoryNCBI Gene:213449Re-query CCDS DB by CCDS ID:53172.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53172.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101292.8 ENSMUSP00000098850.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101292.8Link to Ensembl Protein Viewer:ENSMUSP00000098850.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101292Re-query CCDS DB by Protein ID:ENSMUSP00000098850
Original member Current member EBI ENSMUST00000167154.1 ENSMUSP00000129483.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167154.1Link to Ensembl Protein Viewer:ENSMUSP00000129483.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167154Re-query CCDS DB by Protein ID:ENSMUSP00000129483
Original member Current member NCBI NM_001163104.2 NP_001156576.1 Accepted alive Link to Nucleotide Sequence:NM_001163104.2Link to Protein Sequence:NP_001156576.1Re-query CCDS DB by Nucleotide ID:NM_001163104Re-query CCDS DB by Protein ID:NP_001156576Link to BLAST:NP_001156576.1
Original member Current member NCBI NM_001271008.1 NP_001257937.1 Accepted alive Link to Nucleotide Sequence:NM_001271008.1Link to Protein Sequence:NP_001257937.1Re-query CCDS DB by Nucleotide ID:NM_001271008Re-query CCDS DB by Protein ID:NP_001257937Link to BLAST:NP_001257937.1

Chromosomal Locations for CCDS 53172.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 107870314 107871486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGTCGGAGATCAGATTCAGCAATCTCACTTGGGATCACATCGTAACACTGGATCGTGTGTTACATGAAG
TGATCCCAATTCATGGAAGGGGCAATTTTCCCACGCTGGAGGTAAAACCAAAAGATATTATTCATATTGT
GAAAGATCAACTCATAAAACAGGGCATTGTTGTTAAAGATACAAGATTGAATGGCTCAACAGCAAGTTAC
ATACTCGCAAGCCATAATGGAATCAGCTATAAAGATTTGGATATTATTTTTGGTGTTGATATACCAAGTG
ATGAAGAATTTCATGTAGTTAAGGATGCAGTTTTAAGCTGTCTATTTGACTTCTTGCCAAAAGGTGTTAA
AAAAGAAAAGATTACCCTAAAAACCATGAAAGAAGCATATGTGCAGAAAATGGTAAAAATTTGCAATAAC
CATGATCGCTGGAGTCTCATCTCCCTTTCAAATAACAACGGGAAGAACGTAGAACTAAAATTTGTGAATT
CACTCAGACGACAATTTGAATTTAGTGTAGATTCTTTTCAAATTCTTTTGGATTCCATGTTAGATTTCTA
TAGTGTCCCAAATGCCAAGCTAACTAAAGAATCCTGTCCTGTTGTGGTGGCTGAAAGTATGTATGGGGAC
TTTCAAGAAGCAATGATACATTTGAAATATAAGCTAATATCTACCAGAAAACCTGAAGAGATCAGAGGTG
GTGGCCTTTTGAAGTATAGCAATTTGTTGGTTCGTGACTTCAAACCAGCTTGTCAAACAGAAATTAAGAC
TCTGGAACGTTATATGTGTTCTAGATTTTTCATTGATTTTCCTGATGTAGCAGAACAGCAAAAGAAAATT
GAATCGTACCTCCACAACCATTTCATTGGTGAAGCAAAGAACAAGTATGACTACCTTATGACCTTGCATG
GAGTTGTAAACCAAAGCACCGTCTGCCTCATGGGATATGAAAGAAGGCAGACCCTTAACATGATCACCCT
TTTGGCTTTGAAAGTACTTGGAGAACAGAATATTTTACCCAGTACAGACAACGTAACTTGCTTTTACCAA
CCTGCTCCATACCTAGTTCTTGAGGGAGGGTACCCCAGTTATTATGTAGCATCTGGGCTACCACTGGTTT
ATTTCCAGCCATGTCATACAGTGCAGTTCCCTGTGCAAAATGGTATGATGTAA

Translation (390 aa):
MSEIRFSNLTWDHIVTLDRVLHEVIPIHGRGNFPTLEVKPKDIIHIVKDQLIKQGIVVKDTRLNGSTASY
ILASHNGISYKDLDIIFGVDIPSDEEFHVVKDAVLSCLFDFLPKGVKKEKITLKTMKEAYVQKMVKICNN
HDRWSLISLSNNNGKNVELKFVNSLRRQFEFSVDSFQILLDSMLDFYSVPNAKLTKESCPVVVAESMYGD
FQEAMIHLKYKLISTRKPEEIRGGGLLKYSNLLVRDFKPACQTEIKTLERYMCSRFFIDFPDVAEQQKKI
ESYLHNHFIGEAKNKYDYLMTLHGVVNQSTVCLMGYERRQTLNMITLLALKVLGEQNILPSTDNVTCFYQ
PAPYLVLEGGYPSYYVASGLPLVYFQPCHTVQFPVQNGMM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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