NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18719.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18719.1 Public Mus musculus 4 Ythdf2 23 108 98 CCDS HistoryNCBI Gene:213541Re-query CCDS DB by CCDS ID:18719.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18719.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000152796.7 ENSMUSP00000120414.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000152796.7Link to Ensembl Protein Viewer:ENSMUSP00000120414.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000152796Re-query CCDS DB by Protein ID:ENSMUSP00000120414
Original member Current member NCBI NM_145393.4 NP_663368.3 Accepted alive Link to Nucleotide Sequence:NM_145393.4Link to Protein Sequence:NP_663368.3Re-query CCDS DB by Nucleotide ID:NM_145393Re-query CCDS DB by Protein ID:NP_663368Link to BLAST:NP_663368.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663368.3 579 Q91YT7 579 100% 0 0

Chromosomal Locations for CCDS 18719.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132186924 132186947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132204132 132205715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132210752 132210831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132211432 132211456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132211900 132211926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1740 nt):
ATGTCGGCCAGCAGCCTCTTGGAGCAGAGACCAAAAGGTCAAGGAAACAAAGTACAAAATGGTTCTGTGC
ATCAAAAGGATGGACTAAATGATGATGATTTCGAACCTTACTTGAGCCCACAGGCAAGGCCGAATAATGC
ATATACTGCCATGTCAGACTCCTACTTACCCAGTTACTACAGCCCCTCCATTGGCTTTTCCTATTCTTTG
GGTGAAGCTGCTTGGTCTACTGGAGGTGACACAGCCATGCCCTATCTAACTTCTTATGGACAACTGAGCA
ACGGAGAGCCCCACTTTCTACCAGATGCAATGTTTGGGCAACCAGGAGCCCTAGGTAGCACTCCATTTCT
TGGTCAGCATGGTTTTAATTTTTTTCCCAGTGGGATTGACTTCTCAGCATGGGGAAATAACAGTTCTCAG
GGACAGTCTACTCAAAGCTCTGGATATAGTAGCAATTACGCTTATGCACCCAGCTCCTTAGGTGGAGCCA
TGATTGATGGACAGTCAGCTTTTGCCAATGAGACCCTCAATAAAGCTCCAGGCATGAATACTATAGACCA
AGGGATGGCAGCACTGAAACTAGGTAGCACAGAAGTTGCAAGCAGTGTTCCAAAAGTTGTAGGCTCTGCT
GTTGGTAGTGGGTCCATCACTAGTAACATTGTGGCTTCTAGCAGTTTGCCTCCAGCTACTATTGCTCCTC
CAAAACCAGCATCTTGGGCTGATATTGCTAGCAAGCCTGCAAAACAACAGCCTAAACTGAAGACCAAGAA
TGGCATTGCAGGATCAAGTCTTCCACCACCCCCAATAAAGCATAACATGGATATTGGAACTTGGGATAAC
AAGGGTCCTGTGGCAAAAGCCCCCTCACAGGCTTTGGTTCAAAATATAGGTCAGCCAACCCAGGGATCTC
CTCAGCCTGTTGGACAGCAGGCCAATAATAGCCCACCAGTGGCTCAGGCATCAGTAGGGCAACAGACGCA
GCCATTGCCTCCACCTCCACCACAGCCTGCTCAGCTCTCAGTCCAGCAACAGGCAGCTCAGCCAACTCGC
TGGGTAGCACCTCGGAACCGTGGCAGTGGGTTCGGTCATAATGGGGTGGATGGTAATGGAGTAGGACAGT
CTCAGGCGGGTTCTGGATCTACTCCTTCAGAGCCTCACCCGGTGTTGGAGAAACTTCGGTCCATTAATAA
CTATAACCCTAAAGATTTCGACTGGAATCTGAAACATGGCCGGGTTTTCATCATTAAGAGCTACTCTGAG
GACGATATCCACCGTTCCATTAAGTATAATATCTGGTGCAGCACAGAGCATGGTAACAAGAGACTGGATG
CCGCCTATCGTTCCATGAATGGGAAGGGTCCCGTGTACTTACTTTTCAGTGTCAACGGCAGTGGACACTT
CTGTGGAGTTGCAGAGATGAAATCTGCTGTGGACTACAACACATGTGCAGGTGTGTGGTCCCAGGACAAA
TGGAAGGGTCGTTTCGATGTCAGATGGATTTTTGTGAAGGACGTTCCCAATAGCCAACTGCGACACATTC
GTCTAGAGAACAACGAGAATAAACCAGTGACCAACTCTAGGGACACTCAGGAAGTGCCTCTGGAAAAAGC
TAAGCAGGTGTTGAAAATCATAGCCAGCTACAAGCACACCACTTCCATTTTTGATGACTTCTCACACTAT
GAGAAACGCCAAGAGGAAGAAGAAAGTGTTAAAAAGGAACGTCAAGGTCGTGGGAAATAG

Translation (579 aa):
MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYYSPSIGFSYSL
GEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQHGFNFFPSGIDFSAWGNNSSQ
GQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAPGMNTIDQGMAALKLGSTEVASSVPKVVGSA
VGSGSITSNIVASSSLPPATIAPPKPASWADIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDN
KGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTR
WVAPRNRGSGFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSE
DDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDK
WKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHY
EKRQEEEESVKKERQGRGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH