NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20353.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20353.1 Public Mus musculus 6 Vmn1r52 23 108 98 CCDS HistoryNCBI Gene:113849Re-query CCDS DB by CCDS ID:20353.1Re-query CCDS DB by GeneID:113849See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 20353.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079832.2 ENSMUSP00000078760.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079832.2Link to Ensembl Protein Viewer:ENSMUSP00000078760.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000079832Re-query CCDS DB by Protein ID:ENSMUSP00000078760
Original member Current member EBI ENSMUST00000228394.1 ENSMUSP00000153951.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228394.1Link to Ensembl Protein Viewer:ENSMUSP00000153951.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228394Re-query CCDS DB by Protein ID:ENSMUSP00000153951
Original member Current member EBI ENSMUST00000227893.1 ENSMUSP00000154024.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227893.1Link to Ensembl Protein Viewer:ENSMUSP00000154024.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227893Re-query CCDS DB by Protein ID:ENSMUSP00000154024
Original member Current member EBI ENSMUST00000226520.1 ENSMUSP00000154082.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226520.1Link to Ensembl Protein Viewer:ENSMUSP00000154082.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226520Re-query CCDS DB by Protein ID:ENSMUSP00000154082
Original member Current member EBI ENSMUST00000228665.1 ENSMUSP00000154275.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228665.1Link to Ensembl Protein Viewer:ENSMUSP00000154275.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228665Re-query CCDS DB by Protein ID:ENSMUSP00000154275
Original member NCBI NM_053222.1 NP_444452.1 Updated not alive Link to Nucleotide Sequence:NM_053222.1Link to Protein Sequence:NP_444452.1Re-query CCDS DB by Nucleotide ID:NM_053222Re-query CCDS DB by Protein ID:NP_444452
Current member NCBI NM_053222.2 NP_444452.1 Accepted alive Link to Nucleotide Sequence:NM_053222.2Link to Protein Sequence:NP_444452.1Re-query CCDS DB by Nucleotide ID:NM_053222Re-query CCDS DB by Protein ID:NP_444452Link to BLAST:NP_444452.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444452.1 309 Q9EP79 309 100% 0 0

Chromosomal Locations for CCDS 20353.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 90178716 90179645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGAATAAAGACCATACACTGTACTGTAGTGTTTACATCAGAAATGCCTTCTTCTCTGAGATAGGCATCG
GGATCTCAGCCAACAGCTGCCTTCTCCTCTTCCACACCTTCATGTTCATTCGTGGGCACAGGCCCAGACT
CACGGACTTGCCCATTGGCTTTGTGGCCCTAATACACCTAGTGATGCTGCTACTTGCAGCATATATAACA
GAAGACTTTTTTATGTCTTCAGGAGGATGGGATGACATCACATGTAAACTAGTCATTTTCTTGCACAGGT
TTTTCAGGAGCCTCTCTGTTTGTGCCACTTGCCTGTTGAGTGTCTTCCAGGCCATCATCCTCTGCCCTCA
AAGCTCTCACTTAGCAAAGCTCAAACAGAATTCCCCACATCAGCTCTCATATTTTTTTATTTTTCTGAGT
ATCTTCTATACATCTATCAGCAGCCATATTTTAATAGCAGCTATTCCCACACAAAATATCACCTTTGTTA
ATCTTATATATATCACAAATTCTTGTTCTTTTCTACCCTTGAGTTCATCAATGCAACATACCTTTTCCAC
ACTGTTGGCTTTCAGGAATGTCTTTGTTATTGGTCTCATGGGCCTCTCGACATGCTACATGGCTACTCTC
TTGTGCAGGCATAAGACTCGGTCCCAGCGCCTTCAGAACTCAAAACTTTCTCCCAAAGCAACTCCAGAGC
AACGAGCCCTCAGGACCATTCTAATGCTTATGAGCTTCTTTCTGCTGATGTCAACATTTGACAGCATCAT
CTCCTACTCAAGAACTATATTACAGGGAAATCCACTGCCCTTTTGTTTCCAGATTCTTGTCGCTCATAGC
TATGCTGCTGTCAGTCCTCTTCTGGTTCTCAGTAATGAAAAACGTATAACTAACCTGTTGATATCCATGT
ATGAGAAGATAGTACTTTGA

Translation (309 aa):
MNKDHTLYCSVYIRNAFFSEIGIGISANSCLLLFHTFMFIRGHRPRLTDLPIGFVALIHLVMLLLAAYIT
EDFFMSSGGWDDITCKLVIFLHRFFRSLSVCATCLLSVFQAIILCPQSSHLAKLKQNSPHQLSYFFIFLS
IFYTSISSHILIAAIPTQNITFVNLIYITNSCSFLPLSSSMQHTFSTLLAFRNVFVIGLMGLSTCYMATL
LCRHKTRSQRLQNSKLSPKATPEQRALRTILMLMSFFLLMSTFDSIISYSRTILQGNPLPFCFQILVAHS
YAAVSPLLVLSNEKRITNLLISMYEKIVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH