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Report for CCDS56671.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56671.1 Public Mus musculus 10 Plekhg1 23 108 98 CCDS HistoryNCBI Gene:213783Re-query CCDS DB by CCDS ID:56671.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56671.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042438.12 ENSMUSP00000040495.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042438.12Link to Ensembl Protein Viewer:ENSMUSP00000040495.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042438Re-query CCDS DB by Protein ID:ENSMUSP00000040495
Original member Current member EBI ENSMUST00000120274.7 ENSMUSP00000114056.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120274.7Link to Ensembl Protein Viewer:ENSMUSP00000114056.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120274Re-query CCDS DB by Protein ID:ENSMUSP00000114056
Original member Current member NCBI NM_001033253.3 NP_001028425.1 Accepted alive Link to Nucleotide Sequence:NM_001033253.3Link to Protein Sequence:NP_001028425.1Re-query CCDS DB by Nucleotide ID:NM_001033253Re-query CCDS DB by Protein ID:NP_001028425Link to BLAST:NP_001028425.1
Original member Current member NCBI NM_001159942.1 NP_001153414.1 Accepted alive Link to Nucleotide Sequence:NM_001159942.1Link to Protein Sequence:NP_001153414.1Re-query CCDS DB by Nucleotide ID:NM_001159942Re-query CCDS DB by Protein ID:NP_001153414Link to BLAST:NP_001153414.1

Chromosomal Locations for CCDS 56671.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 3873034 3873441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3903557 3903657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3919136 3919205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3930207 3930253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3933597 3933747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3937850 3937981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3940169 3940351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3940438 3940533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3940634 3940726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3945891 3945924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3947520 3947603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3949667 3949705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3952311 3952333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3956546 3958205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3963401 3964452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4173 nt):
ATGGAGCTTTCCGACAGCGACCGACCCATCAGCTTCGGCTCCACCTCATCCTCGGCCTCCTCCAGGGACA
GCCACGGTTCCTTTGGCAGCAGAATGACTTTGGTTTCAAACAGCCACTTGGGCTTATTTCACCAGGATAA
AGAAGCTGGGGCCATAAAGCTGGAGCTGGTACCAGCACGACCATTTTCCAGCAGCGAACTGCAGAGGGAC
AAGCCTGCCGGACCACAAAACATGAATGGGGTCAGCGAGAAGCAGCCTAGGACTCCATGGAGAATGGACA
CGAGTGGGACACCACAAACCACTGCAGACTCGGCCACCAGCCCCAAGCTCCTCTATGTAGATAGAGTTGT
ACAGGAAATCCTGGAGACAGAGAGGACCTACGTGCAAGATCTAAAAAGCATCGTGGAGGGTTACCTGGAA
TGCATACGGGACCAAACCAAACTTCCCCTGGTGACCGAAGACAGGGCTGCTCTTTTTGGAAATATACAGG
ATATCTACCACTTCAATAGTGAACTTCTTCAAGATCTGGAAAACTGTGAAAACGATCCTGTGGCCATAGC
AGAATGTTTTGTGTCCAAGAGTGAAGAGTTCCACATTTATACCCAGTATTGCACCAATTACCCAAGGTCT
GTGGCCGTGCTAACTGAGTGCATGAGGAACAAGATACTCACCAAGTTCTTCCGGGAGCGCCAGGAAACTC
TGAGACACTCACTACCCCTAGGGTCCTACCTCCTAAAACCAGTCCAGCGGATTCTCAAATATCATCTCCT
TCTTCATGAAATAGAGAACCACCTTGATAAGGCCACGGAAGGCTACGATGTTGTGCTGGATGCCATAGAC
ACGATGCAGCGAGTGGCCTGGCACATCAATGACATGAAACGGAAGCATGAGCATGCTGTCCGCTTGCAGG
AGATCCAGAGCTTGCTAACCAACTGGGAGGGGCCTGACCTCACCAGCTATGGGGAGCTGGTGCTTGAAGG
AACCTTCCGCATCCAGAAGGCCAAAAAGGAGAGGACTCTTTTTCTCCTGGACCAGCTGCTGCTCATCACA
AAAAAGAGAGATGACACGTTTACATACAAGGCTCACATCCTGTGTGGCAACCTCATGCTTGTAGAGGTCA
TACCAAAAGAACCGCTCAGCTTCAGTGTCTTCCACTACAAGAACCCCAAGCTTCAGCACACAGTTCAGGC
CAAATCCCAGCAAGACAAACGTCTCTGGGTTCTGCACCTGAAGAGATTAATTCTGGAGAACCACGCAGCA
GCAGCAAAGATCCCAGCTAAGGCCAAGCAAGCGATTCTTGAAATGGACGCCATCCACTATCCAGGCTTCT
GTTACAGTCCTGAGGGAGAGATGAAGACACCATGTGGTTCTGCACCCCATCGGCTGAGACGGAAGTCAGA
ACCTTCCTCGAGATCACACAAAGTGTTGAAGACCAGCGAAACTTCACAAGATATCCAGAAGGTTTCTAGA
GAGGAAAGCCCTTCCCAGCTGACTTCTGCCGTGCCTGCCCAGAGGAACTGCCAGCCCGGCAGCGCTGCCG
TTATCAATATGCTTCGCGGGGGAGGCGGTGTTAGAAGCCCATGGACAGATCACCACATCAGGCAGCGGAC
GGATCACCACATCCGGCAGCCCTTGTTTCCAAGCCGCCGGTCTCCACAGGAGAATGAGGACGATGACGAC
GATTACCAGATGTTCGTCCCGTCCTTTTCTTCCTCGGATCTCAACTCCACCAGGTTGTGTGAAGAGAACG
CTTCAAGTCGCCCTTGCAGCTGGCATCTGGGCCTCATCGAACCCACAGAGATCTCCAGCTCTGGTCACAG
GATAGTCCGACGGGCCAGTAGTGCAGGTGAAAGCAACGCATGCCCTCCTGAAGTAAGAATTAGAGACTGT
GATGACTCTCAGTACTGTCCCGGGAGACAGCTGCAGAACAGTCCTCGACCAGGAGGAGAGAGGGGGATGA
CTCCCTATGGGTCGTCTGTAGAGTTGACCATTGATGATATAGACCATGTCTATGATAACATAAGTTTTGA
AGACTTAAAGTTAATGGTTGCTAAGCGGGATGAAACTGAATGTTCTTTCTCCAAACCATCCAGAGACTCT
GTTCGCCCCAAGAGTACCCCAGAGTTAGCCTTCTCAAAGAGACAGGTTAGCCACAGTACAAGCTCTCTCC
ACTCAAGGAAAGAGGCAGGCCTCGGTGGTCAAGAGGCATCCACCCAAAGCGTACATGAACACCAGGAAGT
GGAAGAAAACATCTATGACACCATAGGGCTTCCAGACCCACCATCGATGAACTTGAACCACAGCAGCCTT
CATCAGCCCAAAAGGAGCACCTTCCTGGGTCTGGAAGCTGATTTTGCATGCTGTGACAGCCTGAGACCAT
TTGTCTCCCAGGATAGCCTCCAGTTCAGTGAGGATGACATATCTTACCACCAGGGACCCTCCGATACTGA
ATATTTGAGTTTGTTATATGACTCTCCCCGCTGTAATCTGCCTATTGCAGATAAGGCTCTGTCCGACAAA
TTGTCTGAAGAAGTAGATGAAATCTGGAATGATCTGGAAAATTACATCAAGAAAAATGAAGACAAATCAA
GAGACCGCCTCCTTGCGGCCTTTCCTGTGAGCAAAGACGATGCACCAGAGAGGCTATATGTTGACAGCAC
CCATGAGCTGGGCAGGGATACAGGACATGCCACATCTATGCTGGCCCTTCCTACAAGCCAGACTTTCCTC
CTGCCTGGGAAGAGCAGAGTTGTCAGAGCTAGCAGGGCCAACTGCTCCCTGGATAATGACATTATTTCAA
CAGAAGGTTCCTTCCTGAGTCTTAACCAACTCTCTCTGGCCAGTGATGGGCCTCCTGTGGACAATCCCTA
TGACCTGGCCAACTGCAGCCTGCCCCAGACAGACCCAGAAAACCCTGACCCCGGGATGGAGGTCACAGAC
AAGACTAAGAGCAGGGTCTTTATGATGGCCAGGCAGTATAGTCAAAAGATCAAGAAGGTAAATCAGATTT
TGAAAGTGAAAAGCCCAGAGTTGGAGCAACCACCGTCCAGTCAGCATAGGCCCAGTCACAAAGACCTGGT
GGCCATCTTGGAAGAGAAGAGGCAAGGAGGGCCCGCCATTGGTGCCAGGATCGCTGAATATTCCCAACTG
TATGACCAGATTGTGTTCAGAGAGACACCCCTTAAAGCTCAGAAGGATGGCTGGGCCAGCCCCCAAGGAC
CCACCCTCCACAGGCCTGTGTCACCTCCCCAGGCCCAGGGCGCTGGTGAGGACTGGCTCTGGCATTCGCC
CTACAGTAACGGAGAGTTGGCAGATTTCTCTCCCCAGACAGAACAAGACTCAAAATCAAAATACCCCATC
ACATTAGAGAGCACCACAAAAATTAGGCCCAGGCAGTTGTCGGGTGCTTGTTCGGTGCCGTCTCTCCAAG
TGTCGGACCCTCTGCTGGGCTCTGTGCAGCAGAGATGCAGCGTGGTGGTCAGCCAGCCCCACAAAGAGAA
CTCAGGTCAGAGTCCTCTTTACAACTCGCTGGGTCGCAAAGCAATCAGCGCTAAACCCCAGCCTTATAGC
AGGCCTCAGTCATCTTCCTCAATCTTGATAAACAAATCTCTGGACTCTATCAACTACCCCAGTGAGACAG
AGACGAAGCAACTACTCTCTTCACAGAAAAGTCCCAGAGGCGCGAGCCAGCAGGATTTGCCGTCAGGGCT
AGCAAACTCATGTCAACAGGACAGGGGCAAACGGTCCGATCTCACGCTCCAAGACTCGCAGAAGGTTCTC
GTGGTAAATAGAAATTTACCCTTAAGCGCTCAAATAGCGACGCAGAACTACTTTTGTAATTTCAAAGATC
CCGAGGGAGATGAAGATGACTATGTGGAAATCAAGTCAGAAGAGGACGAAGTGCGTCTGGATCTCTCTCC
AAGGCGGGGCAGGAAGTCTGACCCACAGACCCCGGACCCTGACTGTTCGGATAGCATCTGTAGCCACAGC
ACACCTTACTCTTTGAAGGAGCCAGTGAGTGGCAGGCTTGGGCTTCCTCCTTACCTGACAGCATGTAAGG
ACTCTGATAAACTGAATGATTATCTGTGGAGGGGGCCCTCACCCAATCAGCAAAACATTGTCCAATCTCT
GAGGGAGAAATTTCAGTGTCTTAGCTCAAGCAGCTTTGCCTAG

Translation (1390 aa):
MELSDSDRPISFGSTSSSASSRDSHGSFGSRMTLVSNSHLGLFHQDKEAGAIKLELVPARPFSSSELQRD
KPAGPQNMNGVSEKQPRTPWRMDTSGTPQTTADSATSPKLLYVDRVVQEILETERTYVQDLKSIVEGYLE
CIRDQTKLPLVTEDRAALFGNIQDIYHFNSELLQDLENCENDPVAIAECFVSKSEEFHIYTQYCTNYPRS
VAVLTECMRNKILTKFFRERQETLRHSLPLGSYLLKPVQRILKYHLLLHEIENHLDKATEGYDVVLDAID
TMQRVAWHINDMKRKHEHAVRLQEIQSLLTNWEGPDLTSYGELVLEGTFRIQKAKKERTLFLLDQLLLIT
KKRDDTFTYKAHILCGNLMLVEVIPKEPLSFSVFHYKNPKLQHTVQAKSQQDKRLWVLHLKRLILENHAA
AAKIPAKAKQAILEMDAIHYPGFCYSPEGEMKTPCGSAPHRLRRKSEPSSRSHKVLKTSETSQDIQKVSR
EESPSQLTSAVPAQRNCQPGSAAVINMLRGGGGVRSPWTDHHIRQRTDHHIRQPLFPSRRSPQENEDDDD
DYQMFVPSFSSSDLNSTRLCEENASSRPCSWHLGLIEPTEISSSGHRIVRRASSAGESNACPPEVRIRDC
DDSQYCPGRQLQNSPRPGGERGMTPYGSSVELTIDDIDHVYDNISFEDLKLMVAKRDETECSFSKPSRDS
VRPKSTPELAFSKRQVSHSTSSLHSRKEAGLGGQEASTQSVHEHQEVEENIYDTIGLPDPPSMNLNHSSL
HQPKRSTFLGLEADFACCDSLRPFVSQDSLQFSEDDISYHQGPSDTEYLSLLYDSPRCNLPIADKALSDK
LSEEVDEIWNDLENYIKKNEDKSRDRLLAAFPVSKDDAPERLYVDSTHELGRDTGHATSMLALPTSQTFL
LPGKSRVVRASRANCSLDNDIISTEGSFLSLNQLSLASDGPPVDNPYDLANCSLPQTDPENPDPGMEVTD
KTKSRVFMMARQYSQKIKKVNQILKVKSPELEQPPSSQHRPSHKDLVAILEEKRQGGPAIGARIAEYSQL
YDQIVFRETPLKAQKDGWASPQGPTLHRPVSPPQAQGAGEDWLWHSPYSNGELADFSPQTEQDSKSKYPI
TLESTTKIRPRQLSGACSVPSLQVSDPLLGSVQQRCSVVVSQPHKENSGQSPLYNSLGRKAISAKPQPYS
RPQSSSSILINKSLDSINYPSETETKQLLSSQKSPRGASQQDLPSGLANSCQQDRGKRSDLTLQDSQKVL
VVNRNLPLSAQIATQNYFCNFKDPEGDEDDYVEIKSEEDEVRLDLSPRRGRKSDPQTPDPDCSDSICSHS
TPYSLKEPVSGRLGLPPYLTACKDSDKLNDYLWRGPSPNQQNIVQSLREKFQCLSSSSFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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