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Report for CCDS48140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48140.1 Public Homo sapiens X DACH2 24 110 108 CCDS HistoryNCBI Gene:117154Re-query CCDS DB by CCDS ID:48140.1Re-query CCDS DB by GeneID:117154See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48140.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373131.5 ENSP00000362223.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373131.5Link to Ensembl Protein Viewer:ENSP00000362223.1Re-query CCDS DB by Nucleotide ID:ENST00000373131Re-query CCDS DB by Protein ID:ENSP00000362223
Original member Current member NCBI NM_001139514.1 NP_001132986.1 Accepted alive Link to Nucleotide Sequence:NM_001139514.1Link to Protein Sequence:NP_001132986.1Re-query CCDS DB by Nucleotide ID:NM_001139514Re-query CCDS DB by Protein ID:NP_001132986Link to BLAST:NP_001132986.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001132986.1 571 Q96NX9-2 571 100% 0 0

Chromosomal Locations for CCDS 48140.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 86148621 86149108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 86514279 86514391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 86651036 86651167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 86695021 86695179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 86714548 86714720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 86739747 86739882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 86812856 86813004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 86813130 86813277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 86814688 86814834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 86816034 86816099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 86827766 86827770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1716 nt):
ATGGCTGTCTCCGCATCTCCAGTGATCTCTGCAACTTCCAGCGGCGCCGGCGTCCCGGGGGGCTTATTCC
GGGCCGAACCCCTGTACTCGACTCCCAGAGAGCCCCCTCGTCTTACTCCTAATATGATCAATAGTTTCGT
GGTTAATAACCACAGCAACAGTGCCGGAGGCGGCGGCAGGGGCAACACCAACACCAACGAGTGCCGCATG
GTCGACATGCACGGGATGAAGGTGGCTTCGTTCCTGATGGACGGCCAGGAACTGATCTGCCTGCCGCAAG
TCTTTGATCTTTTTCTCAAGCACCTGGTGGGAGGCTTGCACACTGTGTACACCAAGCTGAAGAGACTGGA
TATATCCCCCGTGGTGTGTACTGTTGAGCAGGTCCGGATCCTCCGCGGGCTGGGGGCCATCCAGCCCGGG
GTAAACCGCTGCAAACTCATCACCAGGAAAGACTTCGAAACTTTGTTCACCGATTGCACCAATGCCAGTT
CAAGACCCGGCAGGCCCCCTAAGCGTTCTTTGGGAGTGTTGCAGGAAAATGCCCGCCTTCTGACCCATGC
AGTCCCAGGCCTCTTATCGCCAGGACTTATCACTCCGACAGGTATAACAGCTGCAGCGATGGCTGAGGCG
ATGAAACTTCAGAAGATGAAGCTTATGGCTATGAACACTCTTCAGGGAAATGGAAGCCAAAATGGGACCG
AATCAGAGCCTGATGATCTTAATTCTAACACAGGTGGAAGTGAATCCTCCTGGGATAAAGATAAGATGCA
GTCTCCATTTGCTGCACCTGGACCCCAACATGGAATTGCTCATGCAGCCCTAGCTGGCCAGCCAGGCATT
GGGGGTGCTCCAACCCTCAATCCACTGCAGCAGAACCACCTGCTAACCAATAGACTGGATCTGCCATTTA
TGATGATGCCTCATCCCCTACTTCCAGTCAGCTTACCTCCTGCATCAGTTGCCATGGCAATGAATCAGAT
GAACCATCTCAATACTATTGCCAACATGGCTGCTGCAGCACAGATTCACAGTCCACTCTCCAGAGCTGGT
ACCTCTGTTATAAAGGAGCGGATCCCAGAGAGTCCTTCTCCTGCTCCTTCTCTAGAAGAGAATCATCGTC
CTGGGAGCCAGACCTCTTCCCACACCAGCAGCAGTGTGTCCAGCTCTCCCTCTCAGATGGATCATCATTT
GGAAAGAATGGAAGAGGTACCAGTTCAAATTCCAATAATGAAGTCACCCTTGGACAAGATACAGCTGACT
CCTGGGCAGGCATTGCCCGCTGGATTCCCTGGACCATTCATTTTTGCTGATAGTCTGTCCTCCGTGGAGA
CTCTGTTGACCAACATTCAGGGTCTGCTGAAAGTTGCTTTGGATAATGCTCGCATCCAGGAGAAGCAGAT
TCAACAAGAAAAGAAGGAGCTGCGACTGGAGCTCTATAGAGAGAGAGAAATTAGAGAAAACCTTGAAAGA
CAACTTGCAGTTGAGCTTCAAAGCAGAACTACTATGCAAAAGCGCCTGAAGAAGGAGAAAAAAACCAAGA
GAAAATTGCAGGAAGCCTTGGAATTTGAATCAAAGCGCCGGGAGCAAGTGGAGCAGGCACTTAAGCAAGC
CACCACTAGTGACAGTGGCCTGAGGATGTTAAAAGATACTGGAATTCCAGATATTGAAATAGAAAACAAT
GGGACTCCTCATGATAGTGCTGCTATGCAAGCCTGA

Translation (571 aa):
MAVSASPVISATSSGAGVPGGLFRAEPLYSTPREPPRLTPNMINSFVVNNHSNSAGGGGRGNTNTNECRM
VDMHGMKVASFLMDGQELICLPQVFDLFLKHLVGGLHTVYTKLKRLDISPVVCTVEQVRILRGLGAIQPG
VNRCKLITRKDFETLFTDCTNASSRPGRPPKRSLGVLQENARLLTHAVPGLLSPGLITPTGITAAAMAEA
MKLQKMKLMAMNTLQGNGSQNGTESEPDDLNSNTGGSESSWDKDKMQSPFAAPGPQHGIAHAALAGQPGI
GGAPTLNPLQQNHLLTNRLDLPFMMMPHPLLPVSLPPASVAMAMNQMNHLNTIANMAAAAQIHSPLSRAG
TSVIKERIPESPSPAPSLEENHRPGSQTSSHTSSSVSSSPSQMDHHLERMEEVPVQIPIMKSPLDKIQLT
PGQALPAGFPGPFIFADSLSSVETLLTNIQGLLKVALDNARIQEKQIQQEKKELRLELYREREIRENLER
QLAVELQSRTTMQKRLKKEKKTKRKLQEALEFESKRREQVEQALKQATTSDSGLRMLKDTGIPDIEIENN
GTPHDSAAMQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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