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Report for CCDS16770.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16770.1 Public Mus musculus 2 Tmem230 23 108 98 CCDS HistoryNCBI Gene:70612Re-query CCDS DB by CCDS ID:16770.1Re-query CCDS DB by GeneID:70612See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16770.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028816.8 ENSMUSP00000028816.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028816.8Link to Ensembl Protein Viewer:ENSMUSP00000028816.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028816Re-query CCDS DB by Protein ID:ENSMUSP00000028816
Original member Current member EBI ENSMUST00000110163.7 ENSMUSP00000105792.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110163.7Link to Ensembl Protein Viewer:ENSMUSP00000105792.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110163Re-query CCDS DB by Protein ID:ENSMUSP00000105792
Original member Current member EBI ENSMUST00000110164.7 ENSMUSP00000105793.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110164.7Link to Ensembl Protein Viewer:ENSMUSP00000105793.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110164Re-query CCDS DB by Protein ID:ENSMUSP00000105793
Original member Current member EBI ENSMUST00000180286.1 ENSMUSP00000136826.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180286.1Link to Ensembl Protein Viewer:ENSMUSP00000136826.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180286Re-query CCDS DB by Protein ID:ENSMUSP00000136826
Original member Current member NCBI NM_001141971.1 NP_001135443.1 Accepted alive Link to Nucleotide Sequence:NM_001141971.1Link to Protein Sequence:NP_001135443.1Re-query CCDS DB by Nucleotide ID:NM_001141971Re-query CCDS DB by Protein ID:NP_001135443Link to BLAST:NP_001135443.1
Original member Current member NCBI NM_027478.3 NP_081754.2 Accepted alive Link to Nucleotide Sequence:NM_027478.3Link to Protein Sequence:NP_081754.2Re-query CCDS DB by Nucleotide ID:NM_027478Re-query CCDS DB by Protein ID:NP_081754Link to BLAST:NP_081754.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135443.1 120 Q8CIB6 120 100% 0 0
NP_081754.2 120 Q8CIB6 120 100% 0 0

Chromosomal Locations for CCDS 16770.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 132240486 132240626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132244019 132244141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132245956 132246054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (363 nt):
ATGATGCCGTCTCGTACCAACCTGGCAACTGGACTCCCCAGCAGTAAAGTCAAATATTCAAGGCTTGCCA
GCACAGACGATGGCTACATTGACCTTCAGTTTAAAAAAAGCCCTCCTAAGATCCCTTATAAGGCCATTGC
CCTTGCTACCGTGCTGTTTTTGATTGGCACCTTTCTCATAATCATAGGCTCTCTCCTGCTGTCGGGCTAC
ATCAGCAAAGGGGGGGCAGACCGAGCCGTTCCTGTCCTCATCATAGGCATTTTGGTGTTCCTACCGGGAT
TTTACCATTTGCGCATCGCCTATTATGCATCCAAGGGCTACCGGGGTTACTCCTACGATGACATTCCAGA
CTTTGATGACTAG

Translation (120 aa):
MMPSRTNLATGLPSSKVKYSRLASTDDGYIDLQFKKSPPKIPYKAIALATVLFLIGTFLIIIGSLLLSGY
ISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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