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Report for CCDS18803.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18803.1 Public Mus musculus 4 Tcea3 23 108 98 CCDS HistoryNCBI Gene:21401Re-query CCDS DB by CCDS ID:18803.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18803.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102533.10 ENSMUSP00000099592.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102533.10Link to Ensembl Protein Viewer:ENSMUSP00000099592.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102533Re-query CCDS DB by Protein ID:ENSMUSP00000099592
Original member Current member NCBI NM_011542.2 NP_035672.1 Accepted alive Link to Nucleotide Sequence:NM_011542.2Link to Protein Sequence:NP_035672.1Re-query CCDS DB by Nucleotide ID:NM_011542Re-query CCDS DB by Protein ID:NP_035672Link to BLAST:NP_035672.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035672.1 347 P23881 347 100% 0 0

Chromosomal Locations for CCDS 18803.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 136248049 136248117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136253746 136253808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136254465 136254570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136255150 136255288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136257924 136257986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136264447 136264610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136264872 136264928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136268009 136268163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136271233 136271379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136273644 136273715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136274780 136274788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGGGCCTGGAAGAGGAGCTGTTGAGGATCGCCAAAAAGCTGGAGAAGATGGTGTCCCGGAAGAAGACGG
AAGGGGCCCTGGACCTTCTGAAGAAGCTGAACAGTTGCCAGATGTCCATCCAGCTGCTACAGACCACCAG
GATCGGAGTGGCAGTCAACGGAGTCCGCAAGCACTGCTCAGACAAGGAAGTGGTGTCCTTGGCCAAAGTC
CTCATTAAAAACTGGAAGCGGCTGCTGGACTCCCCCAGAACCACCAAAGGAGAAAGAGAAGAAAGAGAAA
AAGCGAAGAAGGAGAAAGGACTTGGCTGTTCAGACTGGAAACCAGAAGCAGGCCTTTCTCCACCAAGGAA
GAAAGGAGGGGGAGAGCCCAAAACTAGGAGAGACTCTGTAGACTCCAGGTCATCCACCACCTCCTCTCCA
AAAAGGCCTTCGCTGGAAAGATCCAACAGCAGCAAATCTAAAGTGGAAACTCCCACGACCCCCAGCAGCC
CCTCAACTCCCACCTTTGCCCCCGCTGTCTGTCTCCTGGCCCCCTGCTACCTCACCGGGGACTCTGTCCG
GGACAAATGTGTGGAGATGCTGTCAGCAGCTCTGAAGGCAGAAGACAATTTCAAGGACTATGGAGTCAAC
TGTGACAAGCTGGCCTCAGAAATAGAAGACCATATCTATCAAGAACTCAAGAGCACAGACATGAAGTACC
GGAACCGTGTGCGCAGCCGCATCAGCAACCTGAAGGACCCCAGGAACCCAGGCCTGAGGCGGAATGTGCT
CAGTGGGGCCATTTCCCCAGAGCTCATTGCCAAGATGACAGCGGAGGAAATGGCCAGTGATGAGCTGAGG
GAGCTGAGGAACGCCATGACTCAAGAGGCCATCCGTGAGCACCAGATGGCGAAGACAGGCGGCACCACCA
CTGACCTCTTGCGGTGTAGCAAGTGCAAGAAGAAGAATTGTACCTATAACCAGGTGCAGACACGCAGTGC
TGATGAGCCCATGACCACTTTTGTCTTATGCAATGAATGTGGGAATCGCTGGAAGTTCTGCTGA

Translation (347 aa):
MGLEEELLRIAKKLEKMVSRKKTEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKV
LIKNWKRLLDSPRTTKGEREEREKAKKEKGLGCSDWKPEAGLSPPRKKGGGEPKTRRDSVDSRSSTTSSP
KRPSLERSNSSKSKVETPTTPSSPSTPTFAPAVCLLAPCYLTGDSVRDKCVEMLSAALKAEDNFKDYGVN
CDKLASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISPELIAKMTAEEMASDELR
ELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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