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Report for CCDS26383.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26383.1 Public Mus musculus 13 Aldh5a1 23 108 98 CCDS HistoryNCBI Gene:214579Re-query CCDS DB by CCDS ID:26383.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26383.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037615.6 ENSMUSP00000040591.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037615.6Link to Ensembl Protein Viewer:ENSMUSP00000040591.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000037615Re-query CCDS DB by Protein ID:ENSMUSP00000040591
Original member Current member NCBI NM_172532.3 NP_766120.1 Accepted alive Link to Nucleotide Sequence:NM_172532.3Link to Protein Sequence:NP_766120.1Re-query CCDS DB by Nucleotide ID:NM_172532Re-query CCDS DB by Protein ID:NP_766120Link to BLAST:NP_766120.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766120.1 523 Q8BWF0 523 100% 0 0

Chromosomal Locations for CCDS 26383.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 24911561 24911766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24912248 24912306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24913744 24913913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24915762 24915920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24918501 24918644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24919679 24919822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24923967 24924083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24925978 24926148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24927541 24927624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24937251 24937568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGGCGACCTGCTTTCTGCTGCGGAGCTTCTGGGCCGCGCGTCCTGCGCTGCCGCCTCCCGGCCGCTTCC
GCCCGGAGCCCGCAGGAACCCCGCGGCGCAGCTACGCCAGCGGCCCCGGGGGCCTCCACGCCGACCTACT
CCGCGGGGACAGCTTCGTGGGCGGCCGCTGGCTCCCAGCCCCCGCCACCTTCCCGGTGTACGACCCGGCC
AGCGGCGCCAAGCTGGGCACCGTGGCCGACTGCGGGGTACCCGAGGCCCGCGCTGCTGTGCGCGCCGCCT
ACGATGCCTTCAACAGCTGGAAAGGGGTCTCGGTCAAGGAGAGGAGCTTACTACTCCGTAAATGGTACGA
CTTAATGATACAAAATAAGGACGACCTTGCCAAGATCATAACAGCCGAGAGTGGAAAGCCACTGAAAGAG
GCCCAGGGAGAAATTCTGTATTCAGCCCTTTTCCTGGAGTGGTTCTCAGAGGAAGCTCGCCGTATTTATG
GAGACATCATCTATACCTCTGCCAAAGATAAGCGAGGGCTAGTCCTCAAGCAGCCCGTTGGTGTGGCGGC
CATCATCACACCGTGGAATTTTCCCAGTGCGATGATCACCCGGAAAGTGGGGGCCGCCTTGGCAGCTGGC
TGCACTGTGGTGGTGAAACCTGCTGAAGACACACCCTATTCCGCCCTGGCCCTGGCTCAGCTTGCAAACC
AGGCGGGAATCCCTGCAGGTGTCTACAACGTCATTCCCTGCTCTAGAAACAAGGCCAAGGAAGTGGGAGA
GGTCCTGTGTACCGATCCATTGGTGTCCAAAATTTCCTTTACTGGCTCAACAGCAACGGGAAAGATCCTG
CTACATCACGCAGCAAATTCTGTGAAGCGTGTCTCCATGGAGTTGGGTGGCCTCGCCCCATTCATTGTCT
TTGACAGTGCCAACGTAGACCAGGCCGTCGCGGGGGCAATGGCGTCTAAATTTAGGAATGCTGGGCAGAC
TTGCGTTTGCTCAAACAGATTCTTGGTACAGCGGGGTATCCACGATTCCTTTGTAACGAAATTTGCGGAA
GCCATGAAGAAAAGCCTGCGTGTAGGTAACGGATTTGAGGAAGGAACGACTCAAGGGCCGTTAATTAATG
AGAAAGCTGTAGAAAAGGTAGAGAAGCAGGTGAATGACGCAGTTGCCAAAGGGGCCACGGTTGTGACGGG
CGGAAAGCGACACCAAAGTGGAGGAAATTTCTTTGAGCCCACCCTGCTCAGCAATGTCACCAGGGACATG
CTCTGCATCACTGAGGAGACCTTTGGACCTCTGGCACCAGTCATCAAGTTTGATAAGGAGGAAGAGGCCG
TCGCCATCGCAAATGCAGCTGAGGTTGGATTGGCAGGTTACTTTTACTCTCAAGACCCGGCCCAGATCTG
GAGAGTGGCGGAGCAGCTGGAGGTCGGCATGGTCGGTGTGAATGAAGGGCTCATCTCTTCAGTGGAATGT
CCTTTTGGTGGGGTGAAACAGTCCGGCCTTGGGCGCGAGGGGTCCAAGTATGGCATTGACGAGTACCTAG
AGGTCAAGTATGTGTGTTACGGAGGCTTGTAG

Translation (523 aa):
MATCFLLRSFWAARPALPPPGRFRPEPAGTPRRSYASGPGGLHADLLRGDSFVGGRWLPAPATFPVYDPA
SGAKLGTVADCGVPEARAAVRAAYDAFNSWKGVSVKERSLLLRKWYDLMIQNKDDLAKIITAESGKPLKE
AQGEILYSALFLEWFSEEARRIYGDIIYTSAKDKRGLVLKQPVGVAAIITPWNFPSAMITRKVGAALAAG
CTVVVKPAEDTPYSALALAQLANQAGIPAGVYNVIPCSRNKAKEVGEVLCTDPLVSKISFTGSTATGKIL
LHHAANSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNAGQTCVCSNRFLVQRGIHDSFVTKFAE
AMKKSLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVAKGATVVTGGKRHQSGGNFFEPTLLSNVTRDM
LCITEETFGPLAPVIKFDKEEEAVAIANAAEVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVEC
PFGGVKQSGLGREGSKYGIDEYLEVKYVCYGGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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