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Report for CCDS15630.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15630.2 Public Mus musculus 1 Sertad4 23 108 98 CCDS HistoryNCBI Gene:214791Re-query CCDS DB by CCDS ID:15630.2See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 15630.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15630.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016406.13 ENSMUSP00000016406.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016406.13Link to Ensembl Protein Viewer:ENSMUSP00000016406.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000016406Re-query CCDS DB by Protein ID:ENSMUSP00000016406
Original member Current member EBI ENSMUST00000155579.7 ENSMUSP00000116176.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155579.7Link to Ensembl Protein Viewer:ENSMUSP00000116176.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155579Re-query CCDS DB by Protein ID:ENSMUSP00000116176
Original member Current member NCBI NM_001177794.1 NP_001171265.1 Accepted alive Link to Nucleotide Sequence:NM_001177794.1Link to Protein Sequence:NP_001171265.1Re-query CCDS DB by Nucleotide ID:NM_001177794Re-query CCDS DB by Protein ID:NP_001171265Link to BLAST:NP_001171265.1
Original member Current member NCBI NM_198247.2 NP_937890.2 Accepted alive Link to Nucleotide Sequence:NM_198247.2Link to Protein Sequence:NP_937890.2Re-query CCDS DB by Nucleotide ID:NM_198247Re-query CCDS DB by Protein ID:NP_937890Link to BLAST:NP_937890.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171265.1 377 A7DTG3 377 100% 0 0
NP_937890.2 377 A7DTG3 377 100% 0 0

Chromosomal Locations for CCDS 15630.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 192846373 192847215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192849751 192849866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192850952 192851126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1134 nt):
ATGACGCTGGTTCTGTCCATGAATAGATTCTGCGAGCCCATTGTCTCAGAAGGAGCTGCTGAGATTGCCG
GGTACCAAACACTATGGGAGGCTGACAGCTACGGAGGTGCGAGCCCCCCAGGGCCAGCTCCAGTTCCTTC
TCAGGGAGACCGGGGAGCCAGCTCACACCTGGCAGGATCACATTACAGGGGAATTCCAAATCCTATAAGC
ACACCCAAGGTCACATACTTCAAGAGGAAGTATGCAGAAGACGAGGATCTTCACCCACCACTCAGCAGCT
GCAGCCATAAAACCATCTCCATTTTCGAGGAGCGAGCACACATCCTTTACATGTCCTTGGAGAAGCTCAG
GTTCATCGATGACCCAGAAGTGTACCTGCGAAGGTCTGTTCTGATCAACAACCTGATGAAGAGGATCCAC
GGGGAGATTGTCATGCAGAACAGCTGGTGCCTCCCTGCCTGCTCCCTCGGTGGCACCCCCGCCCAAGAGT
GGTTCCTGGCTCAAGACTGTCCTTACCGGAAACGGCCCCGGGTGGCCAAAGAGGAGTGGGAAAAGATCCA
CACTTGCTGTTTTTATCAGGAGTGTGGTGGTCACTGCCTGAACCTACCCCTCTCTGTCAATACAAGTGTT
GGAAGCACCTCGGCCGCCGCTGTGGCCTCGGCTGCCTCTTCCTCTTCCTCCCCATCCACCTCTTCTTCAT
CCTCCCCATCCTCATCCTCCTCTCCCTCTCCCTCTCCCTCTTCCTCCTCCTCCTCCTCCTCCTCTTCCCC
TCTGCCTTTGCCTAGTTGCTCCCACCATGTGGACTTTGACATAGGCAGTGCACCTATTTACAAGAGCCAA
ATACCCGCCAGCGAAATCTTTGTCACTAACATTAGGTCGCTTGGTGTCCAGGAAAAGGTCAAATTCAACA
ATGATGGGAAAGTAAGTCACGAAACCAGCAGAGATGGTGATGCCCTCGGCCAAGAACCTGTGGGGAACGA
CCTTGATTTTGAGTGCAAAGGCCAATTTTACGATTATTTTGAGACTGGATATAATGAGAGAAACCGTGTG
AGTGAGTCTTGGAAAAAGTCTTTGAGGAAAAAGGAGCTTTCTCCGAGCAGCAAACTGTGCTGCAACAGAG
GGGGTAAAATGTGA

Translation (377 aa):
MTLVLSMNRFCEPIVSEGAAEIAGYQTLWEADSYGGASPPGPAPVPSQGDRGASSHLAGSHYRGIPNPIS
TPKVTYFKRKYAEDEDLHPPLSSCSHKTISIFEERAHILYMSLEKLRFIDDPEVYLRRSVLINNLMKRIH
GEIVMQNSWCLPACSLGGTPAQEWFLAQDCPYRKRPRVAKEEWEKIHTCCFYQECGGHCLNLPLSVNTSV
GSTSAAAVASAASSSSSPSTSSSSSPSSSSSPSPSPSSSSSSSSSSPLPLPSCSHHVDFDIGSAPIYKSQ
IPASEIFVTNIRSLGVQEKVKFNNDGKVSHETSRDGDALGQEPVGNDLDFECKGQFYDYFETGYNERNRV
SESWKKSLRKKELSPSSKLCCNRGGKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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