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Report for CCDS17953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17953.1 Public Mus musculus 4 Tox 23 108 98 CCDS HistoryNCBI Gene:252838Re-query CCDS DB by CCDS ID:17953.1Re-query CCDS DB by GeneID:252838See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17953.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039987.3 ENSMUSP00000037966.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039987.3Link to Ensembl Protein Viewer:ENSMUSP00000037966.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000039987Re-query CCDS DB by Protein ID:ENSMUSP00000037966
Original member NCBI NM_145711.4 NP_663757.3 Updated not alive Link to Nucleotide Sequence:NM_145711.4Link to Protein Sequence:NP_663757.3Re-query CCDS DB by Nucleotide ID:NM_145711Re-query CCDS DB by Protein ID:NP_663757
Current member NCBI NM_145711.5 NP_663757.3 Accepted alive Link to Nucleotide Sequence:NM_145711.5Link to Protein Sequence:NP_663757.3Re-query CCDS DB by Nucleotide ID:NM_145711Re-query CCDS DB by Protein ID:NP_663757Link to BLAST:NP_663757.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663757.3 526 Q66JW3-1 526 100% 0 0

Chromosomal Locations for CCDS 17953.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 6688425 6688461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6688819 6688970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6697410 6697796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6711458 6711538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6722138 6722368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6741286 6741567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6822905 6823147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6842361 6842426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6990390 6990491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGGACGTAAGATTTTATCCTCCTCCAGCCCAGCCCGCTGCTGCGCCCGCCGCTCCTTGTCTGGGACCTT
CTCCCTGCCTGGACCCCTACTATTGCAACAAGTTTGACGGGGAGAACATGTATATGAGCATGACAGAGCC
GAGCCAGGACTATGTGCCAGCCAGCCAGTCCTACCCTGGACCAAGTCTGGAAAGTGAAGATTTTAACATC
CCACCCATCACGCCTCCCTCCCTCCCTGACCACTCTCTGGTGCACCTGAATGAGGTAGAATCCGGTTACC
ACTCTCTGTGTCACCCCATGAATCACAATGGCCTGCTCCCGTTCCATCCACAAACCATGGACCTGCCAGA
GATCACGGTGTCCAACATGCTGGGCCAAGATGGCGCACTGCTCTCCAATTCCATCTCTGTGATGCAAGAG
ATTGGGAACGCAGAAGGAGCTCAGTACAGCTCCCATCCTCAGATGGCAGCCATGAGGCCGAGAGGCCAGC
CTACAGACATCAGACAGCAGGCAAGCATGATGCAGCCCGGCCAGCTGACCACCATCAACCAGTCGCAGCT
GAGCGCACAGTTGGGCTTGAACATGGGAGGAACCAATGTGGCCCACAACTCCCCTTCTCCACCCGGGAGC
AAGTCTGCAACCCCTTCCCCATCCAGCTCAGTGCATGAGGATGAGTGTGAGGATGCCTCCAAGATCAATG
GAGGAGAGAAGCGGCCTGCCTCTGATATGGGGAAAAAACCCAAAACTCCCAAGAAGAAGAAGAAGAAGGA
TCCTAATGAGCCCCAGAAGCCTGTGTCTGCCTATGCTTTGTTCTTTCGTGATACCCAGGCTGCCATTAAG
GGCCAGAATCCAAATGCTACTTTTGGTGAAGTATCGAAGATTGTGGCATCAATGTGGGATGGCCTAGGAG
AAGAACAGAAACAGGTCTATAAGAAGAAAACCGAGGCTGCAAAGAAGGAATACCTGAAGCAGCTAGCAGC
ATACAGAGCCAGCCTTGTATCCAAGAGCTACACTGATCCTGTTGATGTTAAGACATCTCAGCCACCCCAG
CTGGTCAACTCAAAGCCGTCAGTATTCCATGGGCCCAGCCAGGCCCACTCAGCTCTGTACCTAAGTTCTC
ACTATCACCAACAACCAGGAATGACTCCTCAGCTCACCGCCATGCATCCGAGCCTCCCCAGAAACATAGC
ACCTAAGCCCAATAACCAAATGCCAGTGACTGTCTCCATAGCCAACATGGCTGTGTCCCCACCACCGCCC
CTTCAGATCAGCCCACCTCTTCATCAGCATCTCAGCATGCAGCAGCATCAGTCGCTTGCCATGCAGCAGC
CCCTTGGGAGTCAGCTCCCCATGCAGGTCCAGACTGCCTTACACTCGCCCACCATGCAGCAAGGATTTAC
TCTTCAACCCGACTATCAGACTATTATCAACCCTACATCTACAGCTGCACAAGTTGTCACCCAAGCGATG
GAGTACGTGCGTTCTGGGTGCAGAAATCCGCCCCCACAGCCCGTGGACTGGAGTACCGACTACTGCAGTA
GTGGGGGCATGCAGAGGGACAAAGCGCTGTATCTCACCTGA

Translation (526 aa):
MDVRFYPPPAQPAAAPAAPCLGPSPCLDPYYCNKFDGENMYMSMTEPSQDYVPASQSYPGPSLESEDFNI
PPITPPSLPDHSLVHLNEVESGYHSLCHPMNHNGLLPFHPQTMDLPEITVSNMLGQDGALLSNSISVMQE
IGNAEGAQYSSHPQMAAMRPRGQPTDIRQQASMMQPGQLTTINQSQLSAQLGLNMGGTNVAHNSPSPPGS
KSATPSPSSSVHEDECEDASKINGGEKRPASDMGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIK
GQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRASLVSKSYTDPVDVKTSQPPQ
LVNSKPSVFHGPSQAHSALYLSSHYHQQPGMTPQLTAMHPSLPRNIAPKPNNQMPVTVSIANMAVSPPPP
LQISPPLHQHLSMQQHQSLAMQQPLGSQLPMQVQTALHSPTMQQGFTLQPDYQTIINPTSTAAQVVTQAM
EYVRSGCRNPPPQPVDWSTDYCSSGGMQRDKALYLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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