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Report for CCDS30268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30268.1 Public Mus musculus X Mageb18 23 108 98 CCDS HistoryNCBI Gene:215641Re-query CCDS DB by CCDS ID:30268.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30268.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088137.2 ENSMUSP00000085460.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088137.2Link to Ensembl Protein Viewer:ENSMUSP00000085460.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000088137Re-query CCDS DB by Protein ID:ENSMUSP00000085460
Original member Current member EBI ENSMUST00000113955.1 ENSMUSP00000109588.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113955.1Link to Ensembl Protein Viewer:ENSMUSP00000109588.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113955Re-query CCDS DB by Protein ID:ENSMUSP00000109588
Original member Current member NCBI NM_173783.3 NP_776144.1 Accepted alive Link to Nucleotide Sequence:NM_173783.3Link to Protein Sequence:NP_776144.1Re-query CCDS DB by Nucleotide ID:NM_173783Re-query CCDS DB by Protein ID:NP_776144Link to BLAST:NP_776144.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776144.1 327 Q8BQR7 327 100% 0 0

Chromosomal Locations for CCDS 30268.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 92119651 92120634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGCCCCGTGGCCAGAAAAGCAAACTCCGTGCCCGTGAGAAGCGCCGCCAGGCCCGTGCTAAAAATGCAC
AGGAGAAAGAAGCCTCTCCAGGTCCTTTCTATGGGTGTCCACATCAGGCTAGTCCTGTTGCCAGTATGCC
TACATCTCCCAACATGCCAATGGGAGAGCAGTCTACCTTTTCACACTCATATACAAGTACAAGTGACCAA
AACCTAGATGAGAAAAGTTCAGATGACTCTGAGGACACTGAGGACTGGTGTAAAGATCCTATTAACCACA
AAGTAGTTTTACTGGTGCAGTTCCTGATGGAGAAGTATCAAAAGAAAGAGGTTATTACTAAGGCAGATAT
GCTGAAGTATGTTATCAAAACATCTAAAAACCACTTCAATGAGATCCTAAAGAGAGCCTCAGAGCACATG
GAACTGGCATTTGGTATTGATCTGAAGGAAGTTGATCCAAACAGGCACTGCTATGCCCTTTTTAATAAAC
TAGAACATACTTTTGATGGAGTGATGGGTGAAGAAAAAATGCCCAGTAGTGGCCTCCTAATGATTGTGCT
GGGTGTGATATTCATGAATGATAACTGTGTCTCTGAAACTGAGATCTGGAATGTGCTGAGTATGATGGGT
GTATATGCTAATAGAAAACACTTCATCTATGGAGATCCTAAGAAGGTCATCACTGAAGATATGGTGCAGC
TAAAGTACTTGGAGTACCAACAAGTGCCCAACAGCAATCCTCCATCCTTTGAATTCACGTGGGGTCCAAG
AGCCTGTGCTGAAATCAGCAAGATGAAAATCTTGGAGTTTTGGGCCAAGATCCATGATACTACACCAGAT
TCCTTCCCAACCTTGTATGAAGCAGCTCTGAAAGATGAAGAAGAGAGAGCCCAAGCCAGGGCTGTAGCCA
GGGCTCACACTGCTGCAATGGCCAGTCCATATTCAAGAGCCACGGTGTGCAGCTCCTCCCATACTAATAT
CTAA

Translation (327 aa):
MPRGQKSKLRAREKRRQARAKNAQEKEASPGPFYGCPHQASPVASMPTSPNMPMGEQSTFSHSYTSTSDQ
NLDEKSSDDSEDTEDWCKDPINHKVVLLVQFLMEKYQKKEVITKADMLKYVIKTSKNHFNEILKRASEHM
ELAFGIDLKEVDPNRHCYALFNKLEHTFDGVMGEEKMPSSGLLMIVLGVIFMNDNCVSETEIWNVLSMMG
VYANRKHFIYGDPKKVITEDMVQLKYLEYQQVPNSNPPSFEFTWGPRACAEISKMKILEFWAKIHDTTPD
SFPTLYEAALKDEEERAQARAVARAHTAAMASPYSRATVCSSSHTNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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