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Report for CCDS41126.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41126.1 Public Mus musculus X Zmat1 23 108 98 CCDS HistoryNCBI Gene:215693Re-query CCDS DB by CCDS ID:41126.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 41126.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064659.5 ENSMUSP00000066815.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064659.5Link to Ensembl Protein Viewer:ENSMUSP00000066815.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000064659Re-query CCDS DB by Protein ID:ENSMUSP00000066815
Original member Current member NCBI NM_175446.3 NP_780655.2 Accepted alive Link to Nucleotide Sequence:NM_175446.3Link to Protein Sequence:NP_780655.2Re-query CCDS DB by Nucleotide ID:NM_175446Re-query CCDS DB by Protein ID:NP_780655Link to BLAST:NP_780655.2

Chromosomal Locations for CCDS 41126.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134972697 134974026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134977648 134977747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134990564 134990629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134992135 134992309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134992397 134992498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134993539 134993645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135008911 135008974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1944 nt):
ATGGCGGCGGCGGGGAGGGGGGACAGTAGTTTTAAAGTAGACACCTGCCCTTGCCTCAGAGAAGATCCCA
CGTGTGATGGACAAGAACAACCTGCGTATTTTACAGATAATTTTTGTAAACCATGTGGAGTGGTTCTACA
GCATGAATCAGAAAGGATTTCACATTTTGAGAGTGAAATACATGCTCAAAATGTTAAGTTCTTTTTTCAA
ATGCATGGAGAACAAAGCGAAGTGCCTGGTAGGAAAGTGAACATGCATGCTGGAAATTCTCAGGTGTGCT
CGAGTGGAGAAGTCAACAGAAACAACTTTACTGATCTGCACAACATGAGTTTTGACTCCCTAGCTGCTGC
TCCATCTCACTATGTGGGAAAGAGCCATTCTCCGACTCAGAACCAGTCACTGGAAGAACATGATCAAGTA
TCTCCATCCACATGCTCACCAAAGATGGATGAACCCAATACTACTCCTGCACCTCCACCCTTCCTGAAGT
CTGTTATTGTGAAGCCTCCTCCAGCATATAGAATGAGAACCTACGTATGCCATATCTGCAGTATCACCTT
TACATCTTTACATATGTTCCGGTCCCACATGCAAGGAACTGAACATCAAATTAAAGAATCTCATGTTATC
AATCAAGTGAAGAATTCAAAGAAAATGCAAGAGTCTTGTCAAGCTGAGTGTGGAGATGACATCAAAATGA
AGAAATCTAGAGAACTAGAGCCCAAGGGTCATTTCAGGGAAATGGAGGATAATTACATGGAAGCCCAAGC
CCATGAATACAGAGAAATGGTTGATTCTAGACCCAGACATAAAATGCTTGAACAAACACTTCCACTTGAA
AATTTCTGGGCACACCCAGGACCATACAATGATTCTAGAGCACTAGAAGAGCAGTTACCTCACAATTTAC
CAGCAGAGTCAAAGACATATGACTCTTTCCAAGATGAACTTGAAGATTACATCAAAGGGCAGAAGGCCAG
AGGACTTGATCCCAATACTAGTTTTAGACGGATGTCAGAAAGCTATAGGTATAGGGATCAGAGATACAGA
GAAAGGGTTGATTCTGAACACAGACAGAGGCCTTGTGAGGAAAGATTTTCATTTGAGGCTCCACAGACCT
ACCAGCAAGAATACAGTGCCTCCCCAGTGGAGGGCCAATCTCCTCACTGGTTACCATCTCATTCAAAGAG
GAGAAATGATGATTTCCAAAATGAATTTGATGATTACAACAAGGTGCAGGAATCTAGAGAATCCGAGCCA
AAGACTTCTTTTAGAAGAATGGATAGCTCTTTTGAAACCCATAATTACGAAGAAATGGTTGACAGAAGAT
CCAGTCATACAATGTTTGAGGAAGGACTCCCATGTGAGACTTTCCAGACTTACACAGATCCATACAGCAG
TGCACAAGCAGTAGAAAACACGTTACCTCATTGCTTACCAGCTTATGAAAACCAACCGAGCCTAGATGCT
GAAAGCCACTATCAGCTTACCACAGAGGAGTTCTCAGAAATGCCTGCTTCTCTGAGCCTCAGTCAACAAG
AAGATAACCCTAGCTCATACAATGTAGACTATGACATTTACAAGCATCTGCCCTCAAATGACAATGCCAG
TGCCCATGAAACAAGTCATAGAAGGCGACGTCAGAAGAGAAAACGACACCTGGAGGAAGGAAAAGAAAGA
CCAGAGAAGGAACAGTCCAAACATAAAAGAAAAAGAAGCTATCAGGATAAAGATTTAGACAAAGACAAGC
TCATCAAGCAAAGTAAGAGAGAGGAAGATAAAGCTGGAGTCAGCTCTGAAAAAACCAAGCATCGAAGAAA
GAAAAGAAAACATGAAACATCCTCAGAGAAAGAAGAACGTAAGCACAAAAAAGAGAAAAAGAAATCTGTT
GAAGAGAGAACAGAAGAGGAAATCCTTTGGGATGAGTCAATTCTTGGGTTCTGA

Translation (647 aa):
MAAAGRGDSSFKVDTCPCLREDPTCDGQEQPAYFTDNFCKPCGVVLQHESERISHFESEIHAQNVKFFFQ
MHGEQSEVPGRKVNMHAGNSQVCSSGEVNRNNFTDLHNMSFDSLAAAPSHYVGKSHSPTQNQSLEEHDQV
SPSTCSPKMDEPNTTPAPPPFLKSVIVKPPPAYRMRTYVCHICSITFTSLHMFRSHMQGTEHQIKESHVI
NQVKNSKKMQESCQAECGDDIKMKKSRELEPKGHFREMEDNYMEAQAHEYREMVDSRPRHKMLEQTLPLE
NFWAHPGPYNDSRALEEQLPHNLPAESKTYDSFQDELEDYIKGQKARGLDPNTSFRRMSESYRYRDQRYR
ERVDSEHRQRPCEERFSFEAPQTYQQEYSASPVEGQSPHWLPSHSKRRNDDFQNEFDDYNKVQESRESEP
KTSFRRMDSSFETHNYEEMVDRRSSHTMFEEGLPCETFQTYTDPYSSAQAVENTLPHCLPAYENQPSLDA
ESHYQLTTEEFSEMPASLSLSQQEDNPSSYNVDYDIYKHLPSNDNASAHETSHRRRRQKRKRHLEEGKER
PEKEQSKHKRKRSYQDKDLDKDKLIKQSKREEDKAGVSSEKTKHRRKKRKHETSSEKEERKHKKEKKKSV
EERTEEEILWDESILGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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