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Report for CCDS24177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24177.1 Public Mus musculus 10 Rab21 23 108 98 CCDS HistoryNCBI Gene:216344Re-query CCDS DB by CCDS ID:24177.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24177.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020343.8 ENSMUSP00000020343.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020343.8Link to Ensembl Protein Viewer:ENSMUSP00000020343.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020343Re-query CCDS DB by Protein ID:ENSMUSP00000020343
Original member Current member NCBI NM_024454.1 NP_077774.1 Accepted alive Link to Nucleotide Sequence:NM_024454.1Link to Protein Sequence:NP_077774.1Re-query CCDS DB by Nucleotide ID:NM_024454Re-query CCDS DB by Protein ID:NP_077774Link to BLAST:NP_077774.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077774.1 222 P35282 222 100% 0 0

Chromosomal Locations for CCDS 24177.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 115290772 115290911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115294871 115294959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115295429 115295483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115298828 115298891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115301523 115301630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115302732 115302791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115315194 115315346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGGCTGCGGCCGGCGGCGGGGCGGCGGCGGCGGCGGGCCGAGCCTACTCCTTCAAGGTGGTGCTGCTCG
GGGAAGGCTGCGTGGGGAAGACGTCGCTGGTGCTGCGCTACTGCGAGAACAAGTTCAACGACAAGCACAT
CACCACCCTGCAGGCATCTTTCTTAACAAAGAAGTTAAATATTGGTGGAAAAAGAGTAAACCTTGCCATA
TGGGACACAGCAGGTCAGGAGAGATTCCACGCACTGGGCCCAATTTACTACCGAGATTCGAACGGAGCTA
TTTTAGTTTATGATGTAACGGATGAAGATTCCTTTCAGAAGGTAAAAAACTGGGTCAAAGAATTACGAAA
AATGTTGGGAAATGAGATCTGTTTGTGTATAGTTGGTAATAAAATAGACTTGGAAAAGGAGAGGCACGTC
TCTATTCAAGAAGCAGAATCGTATGCAGAGTCTGTGGGAGCCAAGCATTACCATACTTCCGCTAAACAGA
ACAAAGGCATTGAGGAGCTCTTTCTCGACCTTTGTAAAAGAATGATAGAGACAGCCCAGGTGGATGAGAG
AGCAAAAGGCAATGGCTCGAGTCAAGCCGGGGCTGCAAGGCGAGGTGTGCAGATCATCGACGACGAGCCT
CAAGCTCAGAGCAGCGGAGGGTGCTGTTCCTCCGGCTAA

Translation (222 aa):
MAAAGGGAAAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAI
WDTAGQERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHV
SIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQAGAARRGVQIIDDEP
QAQSSGGCCSSG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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