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Report for CCDS24357.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24357.1 Public Mus musculus 11 Pik3ip1 23 108 98 CCDS HistoryNCBI Gene:216505Re-query CCDS DB by CCDS ID:24357.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24357.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045153.10 ENSMUSP00000036921.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045153.10Link to Ensembl Protein Viewer:ENSMUSP00000036921.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000045153Re-query CCDS DB by Protein ID:ENSMUSP00000036921
Original member Current member NCBI NM_178149.4 NP_835362.2 Accepted alive Link to Nucleotide Sequence:NM_178149.4Link to Protein Sequence:NP_835362.2Re-query CCDS DB by Nucleotide ID:NM_178149Re-query CCDS DB by Protein ID:NP_835362Link to BLAST:NP_835362.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835362.2 264 Q7TMJ8-1 264 100% 0 0

Chromosomal Locations for CCDS 24357.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 3330935 3331004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3331915 3332031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3332109 3332228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3333209 3333412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3333505 3333583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3341523 3341727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGCTGTTGGCTTGGGTACACACATTTCTTCTCAGCAACATGCTTCTGGCAGAAGCCTATGGATCTGGAG
GCTGCTTCTGGGACAACGGCCACCTGTACCGGGAGGACCAGCCCTCGCCCGCGCCGGGTCTCCGCTGCCT
CAACTGGTTGGCCGCGCAAGGCAGCCGCGAGTCGCTCACCGAGCCCAGCCCGGGCAACCACAACTACTGC
CGGAACCCGGACCAGGACCCGCGCGGGCCCTGGTGCTACATCAGCAGCGAGACCGGCGTCCCTGAAAAGC
GGCCCTGCGAGGACGTGAGTTGCCCAGAGACCACTTCCCAAGCACCACCGCCATCCTCTGCCATGGAGCT
GGAAGAGAAGTCTGGTGCACCAGGTGACAAAGAGGCACAGGTGTTCCCTCCTGCTAACGCCCTACCAGCC
AGGAGTGAGGCAGCCGAGGTGCAGCCAGTGATCGGGATCAGTCAGCTTGTGAGGATGAACTCCAAGGAAA
AAAAAGACCTAGGAACTCTGGGCTACGTGCTGGGCATTACTATGATGGTGATCATCCTCGCTATTGGAGC
TGGCATTATCGTGGGCTACACTTACAAGAGGGGGAAGGACTTGAAAGAGCAACATGAGAAGAAAGCGTGT
GAGAGGGAGATGCAGCGAATCACCTTGCCCCTGTCTGCCTTCACAAACCCCACCTGTGAGACCGTGGATG
AAAACACCATCATTGTGCACAGCAACCAGACTCCTGCTGACGTGCAGGAGGGCAGCACCCTCCTCACGGG
CCAGGCTGGCACCCCTGGGGCCTGA

Translation (264 aa):
MLLAWVHTFLLSNMLLAEAYGSGGCFWDNGHLYREDQPSPAPGLRCLNWLAAQGSRESLTEPSPGNHNYC
RNPDQDPRGPWCYISSETGVPEKRPCEDVSCPETTSQAPPPSSAMELEEKSGAPGDKEAQVFPPANALPA
RSEAAEVQPVIGISQLVRMNSKEKKDLGTLGYVLGITMMVIILAIGAGIIVGYTYKRGKDLKEQHEKKAC
EREMQRITLPLSAFTNPTCETVDENTIIVHSNQTPADVQEGSTLLTGQAGTPGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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