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Report for CCDS40416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40416.1 Public Mus musculus 8 Prdx2 23 108 98 CCDS HistoryNCBI Gene:21672Re-query CCDS DB by CCDS ID:40416.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40416.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005292.14 ENSMUSP00000005292.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005292.14Link to Ensembl Protein Viewer:ENSMUSP00000005292.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000005292Re-query CCDS DB by Protein ID:ENSMUSP00000005292
Original member Current member EBI ENSMUST00000109733.7 ENSMUSP00000105355.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109733.7Link to Ensembl Protein Viewer:ENSMUSP00000105355.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109733Re-query CCDS DB by Protein ID:ENSMUSP00000105355
Original member Current member EBI ENSMUST00000109734.7 ENSMUSP00000105356.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109734.7Link to Ensembl Protein Viewer:ENSMUSP00000105356.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109734Re-query CCDS DB by Protein ID:ENSMUSP00000105356
Original member Current member EBI ENSMUST00000164807.1 ENSMUSP00000126451.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164807.1Link to Ensembl Protein Viewer:ENSMUSP00000126451.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164807Re-query CCDS DB by Protein ID:ENSMUSP00000126451
Original member Current member NCBI NM_001317385.1 NP_001304314.1 Accepted alive Link to Nucleotide Sequence:NM_001317385.1Link to Protein Sequence:NP_001304314.1Re-query CCDS DB by Nucleotide ID:NM_001317385Re-query CCDS DB by Protein ID:NP_001304314Link to BLAST:NP_001304314.1
Original member Current member NCBI NM_011563.6 NP_035693.3 Accepted alive Link to Nucleotide Sequence:NM_011563.6Link to Protein Sequence:NP_035693.3Re-query CCDS DB by Nucleotide ID:NM_011563Re-query CCDS DB by Protein ID:NP_035693Link to BLAST:NP_035693.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304314.1 198 Q61171 198 100% 0 0
NP_035693.3 198 Q61171 198 100% 0 0

Chromosomal Locations for CCDS 40416.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84970242 84970344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84970436 84970589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84971287 84971409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84971562 84971692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84974000 84974085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGCCTCCGGCAACGCGCAAATCGGAAAGTCGGCTCCTGACTTCACGGCCACAGCGGTGGTGGATGGTG
CCTTCAAGGAAATCAAGCTTTCGGACTACAGAGGGAAGTACGTGGTCCTCTTTTTCTACCCACTGGACTT
CACTTTTGTTTGCCCCACGGAGATCATCGCTTTTAGCGACCATGCTGAGGACTTCCGAAAGCTAGGCTGC
GAGGTGCTGGGAGTGTCTGTGGACTCTCAGTTCACCCACCTGGCGTGGATCAATACCCCACGGAAGGAGG
GAGGCTTGGGCCCCCTGAATATCCCTCTGCTTGCTGACGTGACTAAAAGCTTGTCCCAGAATTACGGCGT
GTTGAAAAATGATGAGGGCATTGCTTACAGGGGTCTCTTTATCATCGATGCCAAGGGTGTCCTTCGCCAG
ATCACAGTCAATGACCTACCTGTGGGACGCTCTGTAGACGAGGCTCTCCGCCTAGTCCAGGCCTTTCAGT
ATACAGACGAGCATGGGGAAGTCTGCCCTGCTGGCTGGAAGCCCGGCAGTGACACCATCAAGCCCAATGT
GGATGACAGCAAGGAATACTTCTCCAAACACAACTGA

Translation (198 aa):
MASGNAQIGKSAPDFTATAVVDGAFKEIKLSDYRGKYVVLFFYPLDFTFVCPTEIIAFSDHAEDFRKLGC
EVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTKSLSQNYGVLKNDEGIAYRGLFIIDAKGVLRQ
ITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYFSKHN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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