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Report for CCDS24635.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24635.1 Public Mus musculus 11 Rufy1 23 108 98 CCDS HistoryNCBI Gene:216724Re-query CCDS DB by CCDS ID:24635.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24635.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020643.3 ENSMUSP00000020643.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020643.3Link to Ensembl Protein Viewer:ENSMUSP00000020643.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000020643Re-query CCDS DB by Protein ID:ENSMUSP00000020643
Original member Current member NCBI NM_172557.3 NP_766145.1 Accepted alive Link to Nucleotide Sequence:NM_172557.3Link to Protein Sequence:NP_766145.1Re-query CCDS DB by Nucleotide ID:NM_172557Re-query CCDS DB by Protein ID:NP_766145Link to BLAST:NP_766145.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766145.1 712 Q8BIJ7 712 100% 0 0

Chromosomal Locations for CCDS 24635.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 50389815 50389958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50390294 50390371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50392019 50392067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50394921 50395015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50397644 50397773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50398371 50398490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50401438 50401535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50404454 50404621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50406367 50406483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50407823 50407924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50410566 50410635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50414517 50414582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50416240 50416301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50417184 50417307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50419621 50419722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50420377 50420494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50421630 50421803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50430784 50431105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2139 nt):
ATGGCCGCCCGCGGAGAATGCCGCCGGGCGGGGCAGGATTCGGAGCCGGAGCCGGAGCGGGAGCCGGAGT
CCGAGCCGGGGCCGGAGCCTGAGCCCCAAGCAGGCCTAGAGTCCGGGGAAGCGTTCGAGATCGTGGACCG
GAGCCAGCTGCCGAGTCCCGGCGAGCTGCGGAGTGCGTCGCGGCCTCGAGTGGCCGACAGCTGGTCGGCG
CCCATCCTGACGCTGGCGCGCAGAGCCACCGGGAACCTGTCGGCGAGCTGCGGCAGCGCGCTGCGCGCGG
CCGCGGGGCTGGGAGACGGCGGCGGCGGCGGGGAGCGCGCAGCTTCCAAAGGCCAGATGATGGAGGAGCG
TGCCAACCTAATGCACATGATGAAACTCAGCATTAAGGTCTTACTCCAGTCTGCCCTTAGCCTGGGACGC
AGTCTGGATGCAGACTATGCCCCCTTGCAGCAGTTCTTTGTAGTGATGGAGCATTGCCTCAAACATGGGC
TGAAAGTCAAGAAGAGTTTCATTGGCCAAAATAAGTCTTTCTTTGGTCCTTTGGAGCTGGTGGAAAAACT
TTGTCCTGAAGCATCAGATATAGCTACCAGTGTCAGGAATCTTCCAGAACTAAAGACAGCCGTGGGAAGA
GGCAGAGCGTGGCTTTATCTTGCTCTCATGCAAAAGAAACTGGCAGATTATCTGAAAGTCCTCATAGACA
ACAAGCAGCTCCTAAGTGAGTTCTATGAGCCCGAGGCCTTAATGATGGAGGAGGAAGGAATGGTGATCGT
GGGTCTGCTGGTGGGACTCAACGTTCTGGATGCCAACCTCTGCTTAAAGGGAGAAGACTTGGATTCTCAG
GTCGGGGTGATTGACTTCTCTCTCTGTCTGAAGGACGCACAGGATCTTGACAGCGGCAGAGAGCATGAAA
GAATTACCGATGTCCTTGATCAGAAAAATTACGTGGAGGAACTTAACCGGCACCTAAGCTGCACAGTTGG
GGATCTTCAGACGAAGATAGATGGCTTGGAAAAGACGAACTCAAAGCTTCAAGAAGAGCTTTCAGCTGCA
ACAGACCGAATTTGTTCCCTACAAAAAGAACAACAGCAGCTGAGAGAACAGAACGAAGTAATTCGAGAAA
GAAGCGAGAAGAGCGTGGAGATAACAAAACAGGACACCAAGGTTGAACTGGAGACTTATAAGCAGACCCG
GCAGGGCCTGGATGAAATGTACAGCGATGTGTGGAAACAGCTGAAGGAGGAGAAGAAAGTCCGACTGGAA
CTGGAAAAGGAGCTGGAGTTGCAGATTGGAATGAAGACGGAGATGGAGATCGCCATGAAGTTGCTGGAGA
AGGACACCCATGAGAAGCAAGACACGCTCGTTGCCCTCCGCCAGCAGCTGGAGGAAGTCAAAGCTATTAA
CTTACAGATGTTTCACAAAGTTCAGAGTGCAGAGAGCAGTTTACAGCAGAAGAATGAAGCCATCGCATCT
TTTGAAGGAAAAACCACTCAGGTGATGTCCAGCATGAAGCAAATGGAGGAAAGGTTACAGCAGGCGGAAC
GGGCCAGGCAGGCGGCAGAAGAGCGAAGCCACAAGTTGCAGCAGGAGCTCAGCGGGAGGGGCAGTGCCCT
GCAGCTCCAGCTGTCCCAGCTGCGGGACCAATGCTCAGGTCTAGAGAAAGAACTGAAGTCAGAAAAAGAA
CAAAGACAAGCTCTCCAGAGAGAACTACAGCGTGAGAAAGACACCTCTTGTCTGCTCCAGACGGAGCTGC
AGCAAGTGGAAGGCCTGAAGAAGGAGCTGCGGGAGCTCCAAGACGAGAAGGCAGAGTTACGGAAGGTCTG
TGAGGAGCAGGAGCAAGCCCTCCAGGAAATGGGACTACACCTTAGCCAGTCCAAACTGAAGATGGAAGAC
ATAAAGGAAGTAAATAAGGCACTGAAGGGCCACACATGGTTGAAAGATGACGAGGCAACACATTGTAAGC
AGTGTGAGAAGGACTTCTCCATTTCTCGGAGGAAGCACCACTGCCGAAACTGTGGCCACATTTTCTGCAA
CACCTGCTCTAGCAACGAGCTGGCCCTGCCCTCCTACCCTAAGCCAGTGCGTGTGTGTGACAGCTGCCAT
ACCCTGCTACTGCAGCGCTGCTCCTCCACTGCCTCCTGA

Translation (712 aa):
MAARGECRRAGQDSEPEPEREPESEPGPEPEPQAGLESGEAFEIVDRSQLPSPGELRSASRPRVADSWSA
PILTLARRATGNLSASCGSALRAAAGLGDGGGGGERAASKGQMMEERANLMHMMKLSIKVLLQSALSLGR
SLDADYAPLQQFFVVMEHCLKHGLKVKKSFIGQNKSFFGPLELVEKLCPEASDIATSVRNLPELKTAVGR
GRAWLYLALMQKKLADYLKVLIDNKQLLSEFYEPEALMMEEEGMVIVGLLVGLNVLDANLCLKGEDLDSQ
VGVIDFSLCLKDAQDLDSGREHERITDVLDQKNYVEELNRHLSCTVGDLQTKIDGLEKTNSKLQEELSAA
TDRICSLQKEQQQLREQNEVIRERSEKSVEITKQDTKVELETYKQTRQGLDEMYSDVWKQLKEEKKVRLE
LEKELELQIGMKTEMEIAMKLLEKDTHEKQDTLVALRQQLEEVKAINLQMFHKVQSAESSLQQKNEAIAS
FEGKTTQVMSSMKQMEERLQQAERARQAAEERSHKLQQELSGRGSALQLQLSQLRDQCSGLEKELKSEKE
QRQALQRELQREKDTSCLLQTELQQVEGLKKELRELQDEKAELRKVCEEQEQALQEMGLHLSQSKLKMED
IKEVNKALKGHTWLKDDEATHCKQCEKDFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCH
TLLLQRCSSTAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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