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Report for CCDS24914.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24914.1 Public Mus musculus 11 Nlgn2 23 108 98 CCDS HistoryNCBI Gene:216856Re-query CCDS DB by CCDS ID:24914.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24914.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056484.9 ENSMUSP00000053097.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056484.9Link to Ensembl Protein Viewer:ENSMUSP00000053097.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000056484Re-query CCDS DB by Protein ID:ENSMUSP00000053097
Original member Current member EBI ENSMUST00000108634.8 ENSMUSP00000104274.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108634.8Link to Ensembl Protein Viewer:ENSMUSP00000104274.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108634Re-query CCDS DB by Protein ID:ENSMUSP00000104274
Original member Current member NCBI NM_001364137.1 NP_001351066.1 Accepted alive Link to Nucleotide Sequence:NM_001364137.1Link to Protein Sequence:NP_001351066.1Re-query CCDS DB by Nucleotide ID:NM_001364137Re-query CCDS DB by Protein ID:NP_001351066Link to BLAST:NP_001351066.1
Original member Current member NCBI NM_198862.2 NP_942562.2 Accepted alive Link to Nucleotide Sequence:NM_198862.2Link to Protein Sequence:NP_942562.2Re-query CCDS DB by Nucleotide ID:NM_198862Re-query CCDS DB by Protein ID:NP_942562Link to BLAST:NP_942562.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351066.1 836 Q69ZK9 836 100% 0 0
NP_942562.2 836 Q69ZK9 836 100% 0 0

Chromosomal Locations for CCDS 24914.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69825203 69826079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69826744 69827340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69827716 69827908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69828018 69828203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69828365 69828514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69830563 69830613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69833982 69834438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2511 nt):
ATGTGGCTCCTGGCGTTGTGTCTGGTGGGGCTGGCTGGGGCTCAACGGGGAGGAGGGGGTCCCGGCGGCG
GCGCCCCGGGCGGCCCAGGCCTGGGCCTCGGCAGCCTCGGGGAGGAGCGCTTCCCCGTGGTGAACACAGC
CTACGGGCGAGTGCGCGGTGTGCGGCGCGAGCTCAACAACGAGATCCTGGGCCCGGTCGTGCAGTTCTTG
GGCGTGCCCTACGCCACGCCGCCCTTGGGCGCCCGCCGCTTCCAGCCGCCTGAGGCACCTGCCTCGTGGC
CCGGCGTGCGCAACGCCACCACCCTGCCGCCCGCCTGCCCGCAGAACCTGCACGGGGCCCTGCCGGCCAT
CATGCTGCCTGTGTGGTTCACCGACAACTTGGAGGCGGCCGCCACCTACGTGCAGAACCAGAGCGAGGAC
TGCCTGTACCTCAACCTCTACGTGCCCACTGAGGACGGTCCGCTCACAAAAAAACGTGACGAGGCGACGC
TCAATCCGCCAGACACAGATATCCGGGACTCTGGGAAGAAACCGGTCATGCTGTTTCTACACGGCGGCTC
CTACATGGAAGGCACCGGGAACATGTTTGACGGCTCAGTCCTGGCTGCCTATGGCAATGTCATCGTAGTC
ACACTCAACTACCGTCTTGGGGTGCTCGGTTTTCTCAGCACTGGTGACCAGGCTGCAAAAGGCAACTATG
GGCTCCTGGACCAGATCCAGGCCCTGCGCTGGCTCAGTGAAAACATTGCCCACTTTGGAGGTGACCCTGA
ACGCATCACTATCTTTGGGTCTGGTGCAGGGGCCTCCTGTGTCAACTTGCTGATCCTTTCCCACCACTCA
GAAGGACTGTTCCAGAAGGCCATTGCTCAAAGTGGTACTGCCATTTCCAGCTGGTCTGTCAACTACCAGC
CGCTCAAGTACACGCGGCTGCTGGCGGCCAAAGTGGGCTGTGACCGAGAAGACAGCACTGAAGCTGTGGA
GTGTCTGCGCCGGAAGTCTTCCCGGGAGCTAGTGGACCAGGATGTACAGCCTGCCCGCTACCACATTGCC
TTTGGGCCTGTGGTGGACGGCGACGTAGTCCCTGATGACCCCGAGATCCTCATGCAACAGGGGGAATTCC
TCAACTACGACATGCTCATTGGTGTCAACCAGGGAGAGGGTCTCAAGTTCGTGGAGGACTCTGCAGAGAG
TGAGGACGGTGTGTCTGCCAGCGCCTTTGACTTCACCGTCTCCAACTTTGTGGACAACTTGTACGGGTAC
CCAGAAGGCAAGGACGTGCTTCGAGAGACCATCAAGTTCATGTACACGGACTGGGCTGACAGGGACAATG
GCGAGATGCGGCGGAAGACCCTGCTGGCGCTCTTTACCGACCACCAGTGGGTCGCCCCGGCTGTGGCCAC
CGCCAAGCTGCATGCCGACTACCAGTCCCCCGTCTACTTTTACACTTTCTACCACCACTGCCAGGCAGAG
GGCCGGCCAGAGTGGGCAGACGCAGCGCACGGGGACGAGCTGCCCTACGTCTTTGGTGTCCCCATGGTGG
GCGCCACTGACCTCTTCCCCTGCAACTTCTCCAAGAACGATGTCATGCTCAGCGCAGTAGTCATGACCTA
TTGGACCAACTTCGCCAAGACTGGTGACCCCAACCAGCCTGTGCCACAGGACACCAAGTTCATCCACACC
AAGCCCAACCGCTTTGAAGAGGTAGTGTGGAGCAAGTTCAACAGCAAGGAAAAGCAGTATCTGCACATAG
GCTTGAAACCACGCGTGCGCGACAACTACCGTGCCAACAAGGTGGCCTTCTGGCTGGAGCTCGTGCCCCA
CCTGCACAACCTGCACACAGAGCTCTTCACCACCACCACTCGCCTGCCTCCCTATGCCACACGCTGGCCA
CCTCGCACACCTGGTCCTGGCACTTCCGGCACACGCCGTCCTCCCCCACCTGCCACTCTGCCACCTGAGT
CTGATATTGACCTAGGCCCAAGGGCCTATGACCGCTTCCCCGGTGACTCGAGGGACTACTCCACGGAGCT
AAGCGTGACTGTGGCAGTGGGTGCCTCCCTCCTCTTCCTCAACATCCTTGCCTTTGCCGCCCTCTATTAC
AAGCGGGACCGGCGCCAGGAGCTGCGGTGCCGGAGGCTTAGCCCACCAGGAGGCTCAGGCTCAGGTGTGC
CTGGTGGGGGCCCCCTGCTTCCCACTGCTGGCCGTGAGCTACCCCCGGAGGAGGAGCTAGTATCGCTGCA
GCTGAAGCGGGGTGGTGGTGTTGGGGCGGACCCTGCTGAGGCCCTGCGCCCTGCCTGTCCACCCGACTAT
ACCCTGGCCTTGCGCCGGGCACCGGACGATGTGCCTCTCTTGGCCCCCGGGGCCCTAACCCTGCTGCCTA
GTGGCCTGGGGCCCCCGCCCCCGCCCCCACCCCCTTCTCTCCATCCCTTTGGGCCCTTCCCACCCCCACC
CCCTACTGCTACCAGCCACAACAACACGCTACCCCATCCCCACTCCACCACTCGGGTATAG

Translation (836 aa):
MWLLALCLVGLAGAQRGGGGPGGGAPGGPGLGLGSLGEERFPVVNTAYGRVRGVRRELNNEILGPVVQFL
GVPYATPPLGARRFQPPEAPASWPGVRNATTLPPACPQNLHGALPAIMLPVWFTDNLEAAATYVQNQSED
CLYLNLYVPTEDGPLTKKRDEATLNPPDTDIRDSGKKPVMLFLHGGSYMEGTGNMFDGSVLAAYGNVIVV
TLNYRLGVLGFLSTGDQAAKGNYGLLDQIQALRWLSENIAHFGGDPERITIFGSGAGASCVNLLILSHHS
EGLFQKAIAQSGTAISSWSVNYQPLKYTRLLAAKVGCDREDSTEAVECLRRKSSRELVDQDVQPARYHIA
FGPVVDGDVVPDDPEILMQQGEFLNYDMLIGVNQGEGLKFVEDSAESEDGVSASAFDFTVSNFVDNLYGY
PEGKDVLRETIKFMYTDWADRDNGEMRRKTLLALFTDHQWVAPAVATAKLHADYQSPVYFYTFYHHCQAE
GRPEWADAAHGDELPYVFGVPMVGATDLFPCNFSKNDVMLSAVVMTYWTNFAKTGDPNQPVPQDTKFIHT
KPNRFEEVVWSKFNSKEKQYLHIGLKPRVRDNYRANKVAFWLELVPHLHNLHTELFTTTTRLPPYATRWP
PRTPGPGTSGTRRPPPPATLPPESDIDLGPRAYDRFPGDSRDYSTELSVTVAVGASLLFLNILAFAALYY
KRDRRQELRCRRLSPPGGSGSGVPGGGPLLPTAGRELPPEEELVSLQLKRGGGVGADPAEALRPACPPDY
TLALRRAPDDVPLLAPGALTLLPSGLGPPPPPPPPSLHPFGPFPPPPPTATSHNNTLPHPHSTTRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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