NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24952.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24952.1 Public Mus musculus 11 Gltpd2 23 108 98 CCDS HistoryNCBI Gene:216871Re-query CCDS DB by CCDS ID:24952.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24952.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057685.2 ENSMUSP00000049732.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057685.2Link to Ensembl Protein Viewer:ENSMUSP00000049732.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000057685Re-query CCDS DB by Protein ID:ENSMUSP00000049732
Original member Current member NCBI NM_146020.1 NP_666132.1 Accepted alive Link to Nucleotide Sequence:NM_146020.1Link to Protein Sequence:NP_666132.1Re-query CCDS DB by Nucleotide ID:NM_146020Re-query CCDS DB by Protein ID:NP_666132Link to BLAST:NP_666132.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666132.1 321 Q8K0R6 321 100% 0 0

Chromosomal Locations for CCDS 24952.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70519218 70519478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70519717 70519883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70519971 70520508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGGTCATGGGGGTCTCACTGTCCCCAGCCCTGGGACGCTGGTTCCGCCATGCAATTCCCTTCGCTATCT
TAACGCTGTTACTTCTTTACATCAGTATATGGTTCTTCTATGAGTGGCCCTTCCCCTTACCAGCTCAGAG
AACCCAGCAGTCCGGCCTGCGGGGACTCAAACTCCCTTCTCCTTCTCCAGTCCTCGGCTCCCTGCTTAGT
TTCCCGGCAGGGGTGCAGTCCTGCAATCCAGAGAGACCGCTACCTTCCCAGACTGGCCCAGCGGCCAGAC
CCCTAGTGGTCCCAGAGAAGGAAGAGCTTCCCTGTCTAGGGCCTCATGGGGCGCTGGGTCGCATGGTGAG
CCCCTTCCTGGCCTGTATGAGCCCTGAAGGGGATGTGGCGTTGTCTCAGTATCTGGCAGGATGGAGAGAA
CTACTTAGGTTCCTAACTCCCCTTGGCACTGTCTTCGCCTTTGCCACCAGCGAGGCCTTCAACAAGGTGA
CCGACCTCGAGGCTCGTGTGCACGGCCCCAATGCTTCACACTACACATCGCTGATGACTATGATCACATG
GGAGCGGGGAGCAGGATTGCTACAGCGCCCGGGAACCGAACCTGGGCATTCAGCCGGGTCCTCGGGCTCT
CGAACGCTACTTTTGTTGCATCGCGCGCTGCGCTGGTCCCAGCTCTGCCTCCACAGGGTGGCGACAGGGA
CGCTTGGAGGTCCAGATGCGGGCACGCAGTGCGGGGAAGCCTACAGCACCGCCCTGGCCCCGCACCATCC
ATGGCTTATCCGTCAGGCCGCTCGCCTGGCGATCTTGGCCCTCCCGAGTCGCGGTCGCCTGCTCCAGCTG
GCGTGTCCCGGAACAGGAGAGGCGGACGCGCGGGTTGCTCTGGCCCGGGCCGCCGGCGTCCTGGAGGATG
TGTACAATCGTACCCAGGGCCTGCTGGCCGGCCACGGCCTGCTCCAGCTGGCTTGA

Translation (321 aa):
MVMGVSLSPALGRWFRHAIPFAILTLLLLYISIWFFYEWPFPLPAQRTQQSGLRGLKLPSPSPVLGSLLS
FPAGVQSCNPERPLPSQTGPAARPLVVPEKEELPCLGPHGALGRMVSPFLACMSPEGDVALSQYLAGWRE
LLRFLTPLGTVFAFATSEAFNKVTDLEARVHGPNASHYTSLMTMITWERGAGLLQRPGTEPGHSAGSSGS
RTLLLLHRALRWSQLCLHRVATGTLGGPDAGTQCGEAYSTALAPHHPWLIRQAARLAILALPSRGRLLQL
ACPGTGEADARVALARAAGVLEDVYNRTQGLLAGHGLLQLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH