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Report for CCDS25124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25124.1 Public Mus musculus 11 Utp6 23 108 98 CCDS HistoryNCBI Gene:216987Re-query CCDS DB by CCDS ID:25124.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25124.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043152.5 ENSMUSP00000046643.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043152.5Link to Ensembl Protein Viewer:ENSMUSP00000046643.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000043152Re-query CCDS DB by Protein ID:ENSMUSP00000046643
Original member Current member EBI ENSMUST00000108241.7 ENSMUSP00000103876.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108241.7Link to Ensembl Protein Viewer:ENSMUSP00000103876.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108241Re-query CCDS DB by Protein ID:ENSMUSP00000103876
Original member Current member NCBI NM_144826.3 NP_659075.1 Accepted alive Link to Nucleotide Sequence:NM_144826.3Link to Protein Sequence:NP_659075.1Re-query CCDS DB by Nucleotide ID:NM_144826Re-query CCDS DB by Protein ID:NP_659075Link to BLAST:NP_659075.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659075.1 597 Q8VCY6 597 100% 0 0

Chromosomal Locations for CCDS 25124.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 79935955 79936109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79937673 79937745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79940894 79940960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79941878 79941987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79942127 79942207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79943231 79943410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79945779 79945856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79946206 79946285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79948891 79949075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79950770 79950851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79951599 79951680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79953577 79953654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79955611 79955729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79956737 79956800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79957341 79957388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79958786 79958878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79959109 79959150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79960747 79960831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79962218 79962309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1794 nt):
ATGGCGGAGATAATTCAGGAACGTATAGAAGATCGAATCCCGGAGTTGGAACAGCTGGAGCGCATCGGAC
TCTTCAGTCACGCGGAGATTAAGGCTATCATCAAGAAGGCTTCCGACCTAGAATACAAAATACATCGGAG
AACCCTTCTCAAGGAAGACTTTATCAACTATGTTCAATATGAAATTAATCTTTTGGAGCTGATCCAGAGA
AGAAGAGCAAGAATTAAATATTCATTTAAGAAGGATGAGATTGAATATTCTATGGTACATCGGGTCCAGG
GTGTCTTTGGTCGTGCTTCAGCGAAGTGGAAAGATGATGTTCAGCTCTGGCTCTCCTATATAGTTTTCTG
TAAGAAATGGGGCACCAAAACTCACCTTAGCAAGATATTCTCTGCCATGCTTGCCATTCACTCAAACAAG
CCAGCTTTGTGGATCATGGCAGCCAAATGGGAAATGGAAGACCGCTTGTCTTCAGAAAGTGCCAGGCAGT
TATTTCTTCGAGCTCTACGCTTTCATCCCGAGTGTCCAAAGCTCTATCAAGAATACTTTAGGATGGAGCT
GATGCATGCTGAGAAACTGAGAAAGGAGAAGCAAGAATTTGAAAAAGCCGCCATGGACATGGGGGATTTT
GATCATCCTGAAGAAATCCTTAAAGGCGAGTTGGCACGGATCATTTATAAAAATTCTATAAGCAAGATTA
AAGGTGCAGAATTCCATGTGTCACTTCTTGCTATTGCTCAGCTATTTGATTTTGCCAAAGATCTACAGAA
GGAAATTTATGATGACCTTCAAGCTCTGCACACCGATGACCCACTCACTTGGGATTATGTGGCGCGGCGA
GAATTAGAGATCGAGTCCCAACCAGGTGAAGAACAGCCTGTGTCGAAACAAGCCAAAGCAGTGGAAATGG
GCCGAAGGGAAGAGAGGTGCTGCGCGGTGTATGAGGAGGCAGTGAAGGCCCTGCCTACAGAGGCCATGTG
GAAGTGTTACATCACCTTTTGCTTGGAGAGGTTTTCTAAGAAGACCAGTAGTGTGCCCCTCAGAGGGCAG
AGGCTGGAAAGAACCATGCTTGCATTCAGGAAGGCCCATGAACTGAAGCTGCTTTCTGAAGTCCAGTACA
AGCAGTGGATTGACTTGTTGCTGCGCCAGGACCTCTTCAAAGAAGCACTGCAGGTGGCAGAGGCTGGGAC
CGAATTGTTCAAGGACTCTGTAACAATGTGGCAGACGAAGCTCCAGGTGCTCATTGACTCAAAGAGCCCG
GATGTAGAGATGCGCTTTGAGGAAGCCTTTGCACACCTCAAACCCCAGGTTTGTCTGCCCTTGTGGATTT
CTTGGGCAGAGTGGAGTGAAAGTGCTAAAAGCCAGGAGGACACGGAAGCCATCTTTAAGAAAGCTATTAT
AGCTGTCACAGGTGCCAGTTCAGTAACTCTGAAGGAGAAATACCTGGATTGGGCCTATCGGAGTGGAGGC
TACAAAAAGGCCAGAGCAGTGTTTAAAAGTTTACAGGAAAGCCGTCCATTTTCGGTTGAGTTTTTCAGGA
AAATGATGCAGTTTGAAAAGGAGCAGGAACCCTGCAAGATGGTAAACCTGAGGGAGTATTACGAGAGGGC
GCTGAGAGAGTTTGGGACTTCAGATTCTGATCTTTGGATGGATTACATCAAGGAAGAATTGAACCATCCC
TTCGGTAAACCTGAGAACTGCGGACAGATCTATTGGCGAGCCATGAAAATGTTGCAGGGACAGTCAGCAG
AGCTGTTTGTAGCTAAACACGCCATGCACCAGGCTGGCCACTAG

Translation (597 aa):
MAEIIQERIEDRIPELEQLERIGLFSHAEIKAIIKKASDLEYKIHRRTLLKEDFINYVQYEINLLELIQR
RRARIKYSFKKDEIEYSMVHRVQGVFGRASAKWKDDVQLWLSYIVFCKKWGTKTHLSKIFSAMLAIHSNK
PALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYQEYFRMELMHAEKLRKEKQEFEKAAMDMGDF
DHPEEILKGELARIIYKNSISKIKGAEFHVSLLAIAQLFDFAKDLQKEIYDDLQALHTDDPLTWDYVARR
ELEIESQPGEEQPVSKQAKAVEMGRREERCCAVYEEAVKALPTEAMWKCYITFCLERFSKKTSSVPLRGQ
RLERTMLAFRKAHELKLLSEVQYKQWIDLLLRQDLFKEALQVAEAGTELFKDSVTMWQTKLQVLIDSKSP
DVEMRFEEAFAHLKPQVCLPLWISWAEWSESAKSQEDTEAIFKKAIIAVTGASSVTLKEKYLDWAYRSGG
YKKARAVFKSLQESRPFSVEFFRKMMQFEKEQEPCKMVNLREYYERALREFGTSDSDLWMDYIKEELNHP
FGKPENCGQIYWRAMKMLQGQSAELFVAKHAMHQAGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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