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Report for CCDS28959.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28959.1 Public Mus musculus 17 Ndc80 23 108 98 CCDS HistoryNCBI Gene:67052Re-query CCDS DB by CCDS ID:28959.1Re-query CCDS DB by GeneID:67052See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28959.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024851.9 ENSMUSP00000024851.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024851.9Link to Ensembl Protein Viewer:ENSMUSP00000024851.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000024851Re-query CCDS DB by Protein ID:ENSMUSP00000024851
Original member Current member NCBI NM_023294.2 NP_075783.2 Accepted alive Link to Nucleotide Sequence:NM_023294.2Link to Protein Sequence:NP_075783.2Re-query CCDS DB by Nucleotide ID:NM_023294Re-query CCDS DB by Protein ID:NP_075783Link to BLAST:NP_075783.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075783.2 642 Q9D0F1 642 100% 0 0

Chromosomal Locations for CCDS 28959.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 71496216 71496353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71499267 71499369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71500272 71500402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71501509 71501601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71504766 71504855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71507260 71507412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71508568 71508773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71511345 71511489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71512393 71512499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71514189 71514282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71517544 71517633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71518738 71518840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71520760 71520932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71521028 71521151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71523582 71523659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71525633 71525733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1929 nt):
ATGAAGCGCAGTTCAGTTTCCACCTGTGGTGCTGGCCGCCTCTCTATGCAGGAGTTAAGGACCCTGGACC
TCAATAAGCCAGGCCTTTATACCCCTCAAACCAAAGAAAGATCAACCTTTGGAAAGCTGAGTACACACAA
ACCGACATCGGAAAGAAAAGTCTCAATATTTGGGAAAAGGACTAGCGGACATGGATCCAGGAATAGTCAA
CTTGGTATATTTTCCAGTTCTGAAAAAATCAAGGACCCAAGACCACTTAATGACAAAGCATTCATTCAGC
AGTGTATTCGACAACTCTATGAGTTTCTTACAGAAAACGGTTATGTGTATAGTGTATCCATGAAGTCTCT
GCAAGCTCCATCCACTAAAGAGTTCCTAAAGATCTTCGCCTTTCTTTATGGCTTTCTGTGCCCGTCGTAT
GAACTTCCTGGTACAAAATGTGAAGAAGAGGTCCCAAGAATTTTTAAAGCACTTGGGTATCCCTTCACAC
TGTCCAAGAGCTCCATGTATACAGTGGGAGCCCCTCACACGTGGCCTCACATCGTGGCTGCCTTGGTGTG
GCTCATAGACTGCATCAAGATTGATACTGCCATGAAAGAAAGCTCACCTTTATTTGATGATGGGCAGCTC
TGGGGAGAAGAGACTGAAGATGGAATTAAACACAATAAGTTGTTTTTGGAGTACACCAAAAAGTGCTATG
AGAAGTTCATGACCGGGGCCGACAGCTTTGAAGAAGAGGATGCTGAGCTGCAGGCGAAGCTGAAGGACTT
GTACAAGGTAGATGCGTCTAAGCTGGAGTCACTCGAAGCAGAAAACAAAGCACTAAATGAACAGATTGCA
AGACTGGAGGAGGAAAGAGAAAGAGAACCGAACCGTCTGATGTCATTGAAGAAACTGAAAGCGTCCTTAC
AAGCAGATGTTCAAAACTATAAAGCATACATGAGCAACTTGGAGTCTCATTTAGCCGTCCTGAAACAGAA
ATCGAATAGTCTTGATGAAGAAATTGGTAGAGTAGAACAAGAATGTGAAACTGTTAAACAGGAAAACACT
CGACTACAGAGTATCGTTGATAACCAGAAGTATTCAGTCGCTGACATTGAGAGAATAAATCATGAGAAAA
ATGAATTGCAGCAGACTATTAATAAATTAACCAAAGACCTGGAAGCCGAACAGCAACAGATGTGGAATGA
AGAATTAAAATACGCAAGAGGCAAAGAGGCGATTGAAGCGCAGCTAGCGGAGTACCACAAGTTGGCTAGA
AAATTAAAGCTTATCCCCAAAGGTGCTGAGAATTCCAAAGGTTACGACTTTGAAATTAAGTTTAATCCTG
AGGCGGGTGCCAACTGCCTTGTCAAATACAGGACTCAAGTGTATGCACCGCTCAAAGAGCTCTTGAATGA
AAGCGAAGAAGAAATTAACAAAGCTCTGAATAAAAAGAGGCATCTGGAGGATACTTTAGAACAACTGAAC
ACCATGAAAACGGAAAGCAAGAACACTGTGAGGATGCTGAAGGAGGAGATTCAGAAACTGGATGACCTTC
ACCAGCAGGCAGTGAAGGAAGCTGAGGAAAAAGACAAGAAGAGTGCCAGTGAGCTTGAGTCCCTGGAGAA
ACACAAGCACCTGCTGGAGAGCGGGGTGAACGATGGCCTCAGCGAGGCCATGGATGAGTTGGACGCCGTC
CAGCGGGAATACCAGCTAACTGTGAAGACCACAACTGAAGAAAGAAGAAAGGTGGAAAACAACTTACAAC
GTCTTTTGGAGATGGTCGCCACACACGTAGGGTCTTTGGAGAAACATCTTGAAGAGGAGAATGCTAAAGC
CGACAGAGAGTATGAAGAATTCATGTCTGAAGATCTCCTGGAAAACATCAGGGAGATGGCAGAGAAGTAT
AAGAGAAATGCTGCCCAACTTAAGGCTCCCGACAAATGA

Translation (642 aa):
MKRSSVSTCGAGRLSMQELRTLDLNKPGLYTPQTKERSTFGKLSTHKPTSERKVSIFGKRTSGHGSRNSQ
LGIFSSSEKIKDPRPLNDKAFIQQCIRQLYEFLTENGYVYSVSMKSLQAPSTKEFLKIFAFLYGFLCPSY
ELPGTKCEEEVPRIFKALGYPFTLSKSSMYTVGAPHTWPHIVAALVWLIDCIKIDTAMKESSPLFDDGQL
WGEETEDGIKHNKLFLEYTKKCYEKFMTGADSFEEEDAELQAKLKDLYKVDASKLESLEAENKALNEQIA
RLEEEREREPNRLMSLKKLKASLQADVQNYKAYMSNLESHLAVLKQKSNSLDEEIGRVEQECETVKQENT
RLQSIVDNQKYSVADIERINHEKNELQQTINKLTKDLEAEQQQMWNEELKYARGKEAIEAQLAEYHKLAR
KLKLIPKGAENSKGYDFEIKFNPEAGANCLVKYRTQVYAPLKELLNESEEEINKALNKKRHLEDTLEQLN
TMKTESKNTVRMLKEEIQKLDDLHQQAVKEAEEKDKKSASELESLEKHKHLLESGVNDGLSEAMDELDAV
QREYQLTVKTTTEERRKVENNLQRLLEMVATHVGSLEKHLEEENAKADREYEEFMSEDLLENIREMAEKY
KRNAAQLKAPDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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