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Report for CCDS26375.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26375.1 Public Mus musculus 13 Scgn 23 108 98 CCDS HistoryNCBI Gene:214189Re-query CCDS DB by CCDS ID:26375.1Re-query CCDS DB by GeneID:214189See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26375.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021770.7 ENSMUSP00000021770.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021770.7Link to Ensembl Protein Viewer:ENSMUSP00000021770.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021770Re-query CCDS DB by Protein ID:ENSMUSP00000021770
Original member Current member NCBI NM_145399.1 NP_663374.1 Accepted alive Link to Nucleotide Sequence:NM_145399.1Link to Protein Sequence:NP_663374.1Re-query CCDS DB by Nucleotide ID:NM_145399Re-query CCDS DB by Protein ID:NP_663374Link to BLAST:NP_663374.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663374.1 276 Q91WD9 276 100% 0 0

Chromosomal Locations for CCDS 26375.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23953856 23953984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23959678 23959746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23962124 23962183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23962782 23962827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23966840 23966895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23973960 23974037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23974808 23974864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23978810 23978899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23981480 23981572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23989774 23989844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23990952 23991033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGGACAACGCACGCAGAAAAACTCCAGCTCGGCTGGATGCTGCCTGCTTCTGGCAGATCTGGCAGCGCT
TCGACAAGGAAGAAAAAGGTTACATAAGAGAGACAGAGCTGGATGCCTTCTTTGATCATTTGCTGGCAAA
ATCTGGCACTGAGGACACTCTTATGGAAGAAAATGTGCAGAAAGTGAAAGAACAGTTGATGACCAGCCAC
AACGTCTCTAAGGAAGGCCGCATACTGATGAAAGAGCTTGCCAGTATGTTCTTATCTGAAGATGAAAATT
TCCTCCTGTTCTTTCGCCTGGAAACTCCCTTGGATAACAGTGTAGAGTTTATGCAGATTTGGCGCAAATA
CGATGCGGACAGCAGTGGTTTCATATCAGCTGCTGAGCTTTGTAACTTTCTTCGAGACCTTTTCCTCCAC
CACAAAAAGAACATTTCCGAGGCTGAACTGGAAGAGTATACTAGCACCATGATGAAGATCTTTGACAAAA
ATAAAGATGGACGTTTGGATCTTAATGACTTGGCAAGGATTCTGGCGCTCCAGGAAAACTTCCTTCTTCA
GTTTAAAATGGATGCTTCTTCTACTGAAGAAAGGAAGAGGGACTTTGAGAAAATCTTTGCCCATTACGAT
GTTAGTAAAACTGGAGCCCTGGAAGGCCCAGAAGTGGATGGATTTGTCAAAGATATGATGGAGCTGGTCC
AGCCCAGCATCAGTGGTGTGGATCTGGATAAGTTCCGGGAGATTCTGCTTCGCCATTGCGATGTCAACAA
GGATGGAAAGATCCAGAAGTCTGAGCTGGCACTGTGTCTTGGGCTAAAAATAAACCCCTGA

Translation (276 aa):
MDNARRKTPARLDAACFWQIWQRFDKEEKGYIRETELDAFFDHLLAKSGTEDTLMEENVQKVKEQLMTSH
NVSKEGRILMKELASMFLSEDENFLLFFRLETPLDNSVEFMQIWRKYDADSSGFISAAELCNFLRDLFLH
HKKNISEAELEEYTSTMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSTEERKRDFEKIFAHYD
VSKTGALEGPEVDGFVKDMMELVQPSISGVDLDKFREILLRHCDVNKDGKIQKSELALCLGLKINP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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