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Report for CCDS24094.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24094.1 Public Mus musculus 10 Rtcb 23 108 98 CCDS HistoryNCBI Gene:28088Re-query CCDS DB by CCDS ID:24094.1Re-query CCDS DB by GeneID:28088See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24094.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001834.3 ENSMUSP00000001834.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001834.3Link to Ensembl Protein Viewer:ENSMUSP00000001834.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000001834Re-query CCDS DB by Protein ID:ENSMUSP00000001834
Original member Current member NCBI NM_145422.4 NP_663397.1 Accepted alive Link to Nucleotide Sequence:NM_145422.4Link to Protein Sequence:NP_663397.1Re-query CCDS DB by Nucleotide ID:NM_145422Re-query CCDS DB by Protein ID:NP_663397Link to BLAST:NP_663397.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663397.1 505 Q99LF4 505 100% 0 0

Chromosomal Locations for CCDS 24094.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 85939012 85939119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85941899 85942018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85942488 85942598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85943209 85943397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85943815 85943990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85946191 85946350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85947177 85947333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85949466 85949622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85951355 85951454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85953437 85953504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85955719 85955797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85957615 85957707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGAGTCGTAACTACAACGATGAGCTACAGTTCTTGGACAAGATCAATAAAAACTGCTGGAGGATCAAGA
AGGGCTTTGTGCCCAACATGCAGGTTGAAGGAGTGTTTTATGTGAATGATGCTCTGGAAAAACTAATGTT
TGAGGAATTAAGGAACGCCTGTCGAGGTGGTGGTGTTGGTGGCTTTCTGCCAGCCATGAAGCAGATTGGC
AATGTGGCAGCCCTGCCTGGAATAGTTCATCGGTCTATCGGGCTTCCTGATGTCCATTCAGGCTATGGGT
TTGCCATAGGGAACATGGCTGCCTTTGATATGAATGACCCTGAGGCCGTTGTATCCCCAGGTGGTGTCGG
ATTTGATATTAACTGTGGTGTCCGCTTGCTAAGAACCAATTTAGATGAGAGCGATGTACAGCCTGTGAAG
GAACAACTTGCCCAAGCTATGTTTGACCACATCCCTGTTGGGGTGGGATCAAAAGGTGTCATTCCAATGA
ATGCCAAAGACTTGGAGGAGGCATTGGAGATGGGGGTGGACTGGTCCCTGAGGGAAGGCTATGCCTGGGC
TGAAGACAAGGAGCACTGTGAGGAGTATGGAAGGATGCTGCAAGCCGACCCCAATAAGGTCTCACCCAGG
GCAAAGAAAAGGGGCCTTCCTCAGTTGGGGACCCTGGGAGCAGGCAACCATTATGCAGAAATCCAGGTTG
TAGATGAGATTTTCAATGAGTATGCCGCCAAGAAGATGGGCATCGACCATAAGGGACAGGTGTGTGTGAT
GATCCACAGTGGAAGCAGAGGCTTGGGCCACCAAGTAGCTACAGATGCACTGGTAGCTATGGAAAAGGCC
ATGAAGAGAGACAAGATTATAGTCAATGACCGGCAGTTGGCTTGTGCTCGGATTGCATCCCCAGAGGGAC
AAGACTATCTAAAGGGAATGGCTGCAGCTGGAAACTACGCCTGGGTTAACCGCTCCTCTATGACCTTCTT
AACCCGTCAGGCTTTTGCCAAAGTCTTCAACACAACCCCTGATGACCTGGACCTGCATGTGATCTATGAT
GTGTCGCACAATATCGCCAAAGTGGAGCAGCACGTGGTGGATGGGAAGGAACGGACGCTGCTGGTGCACA
GGAAGGGATCCACCCGTGCTTTCCCGCCTCACCACCCCCTCATTGCTGTGGATTATCAACTCACAGGACA
ACCAGTGCTTATTGGTGGCACCATGGGGACCTGTAGTTACGTTCTGACTGGCACTGAACAAGGCATGACT
GAGACCTTTGGAACAACCTGTCATGGAGCGGGCCGTGCTTTGTCCAGAGCAAAATCACGTCGTAACTTAG
ATTTCCAAGATGTCTTAGACAAACTGGCAGACATGGGAATTGCAATCCGGGTTGCTTCCCCCAAGCTGGT
TATGGAAGAGGCACCAGAGTCCTATAAGAATGTGACAGACGTCGTGAACACCTGCCATGATGCTGGGATC
AGCAAGAAGGCCATTAAACTGAGACCAATTGCTGTTATTAAAGGGTAG

Translation (505 aa):
MSRNYNDELQFLDKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIG
NVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVK
EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSPR
AKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKA
MKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYD
VSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGI
SKKAIKLRPIAVIKG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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