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Report for CCDS20173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20173.1 Public Mus musculus 6 Vmn1r6 23 108 98 CCDS HistoryNCBI Gene:171193Re-query CCDS DB by CCDS ID:20173.1Re-query CCDS DB by GeneID:171193See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20173.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079669.6 ENSMUSP00000078611.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079669.6Link to Ensembl Protein Viewer:ENSMUSP00000078611.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079669Re-query CCDS DB by Protein ID:ENSMUSP00000078611
Original member Current member EBI ENSMUST00000228285.1 ENSMUSP00000153988.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228285.1Link to Ensembl Protein Viewer:ENSMUSP00000153988.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228285Re-query CCDS DB by Protein ID:ENSMUSP00000153988
Original member Current member EBI ENSMUST00000227131.1 ENSMUSP00000153994.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227131.1Link to Ensembl Protein Viewer:ENSMUSP00000153994.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227131Re-query CCDS DB by Protein ID:ENSMUSP00000153994
Original member Current member EBI ENSMUST00000227847.1 ENSMUSP00000154306.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227847.1Link to Ensembl Protein Viewer:ENSMUSP00000154306.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227847Re-query CCDS DB by Protein ID:ENSMUSP00000154306
Original member Current member EBI ENSMUST00000226689.1 ENSMUSP00000154450.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226689.1Link to Ensembl Protein Viewer:ENSMUSP00000154450.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226689Re-query CCDS DB by Protein ID:ENSMUSP00000154450
Original member Current member NCBI NM_134175.1 NP_598936.1 Accepted alive Link to Nucleotide Sequence:NM_134175.1Link to Protein Sequence:NP_598936.1Re-query CCDS DB by Nucleotide ID:NM_134175Re-query CCDS DB by Protein ID:NP_598936Link to BLAST:NP_598936.1

Chromosomal Locations for CCDS 20173.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 57002355 57003266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGTTCTCACTCAAGAATGTTCTTTATTTCCAAGCTGGGTTTGGAGTCCTGGCCAACATGTTTCTTGTTT
GTTTCTATATTTACATAATCCTAGGACACAGACCTAAGCCCACAGACCTGATCTCCTGTCAACTGACCTT
GGTTCACATAATGATGTTTCTCACTGGAGGGGATGTTTGGCTTACAGACTTATTTGAGTCACTGAACATT
GAGAATGACTTCAAGTGTAAGGCAACTTTTTACATAAGCAGGGTGATGAGAGGCCTCTCTATCTGTACCA
CCTGCCTCCTCAGTGTGTTCCAAGCTGTCACAATCAGTCCCAATACTACTTTTTTGGCAAAATATAAACA
AAAACTAAAAAATTACATGATATATGCTTTCTTATGTATGTGGTCTTTCAATTTGTCCTTCAGTAGTAAC
AGGATCTTCTTTGTTGGTGCTTATACCAATGTGAGTGAGACCAAACAGATGAAAGCTACTAAATACTGCT
CACTCTTACCCATGAACAATATCATCAGAGGAGTTATTTTAACAGTGACAACTTCCAGAGATGTGTTTCT
TGTAGGAGCCATGCTAACCACAAGTACATACATGGTGATTATCTTGTCCCGACATCAGAGGCAATGCAAG
CATCTTCATAGCATCAACCACATGAGAGCATCCCCTGAGAAAAGGGCCACCCAGACCATCTTGATGCTGG
TAGTTTTCTTTGTGGTTATGTATTGGGTAGATTTCATCATTTCAACCACCTCATTCCTCTTATGGAGATA
TGATCCAGTCATCCTGACTCTTCAGAAGTTTGTGATGAATGCCTATCCCACAATTACTCCTTTGATACAA
GTCAGTTTTGATAACAGAATAATAATTATGCTGAAAAACCTTCAGTCAAAACACTACCATCTATATTTTT
AA

Translation (303 aa):
MFSLKNVLYFQAGFGVLANMFLVCFYIYIILGHRPKPTDLISCQLTLVHIMMFLTGGDVWLTDLFESLNI
ENDFKCKATFYISRVMRGLSICTTCLLSVFQAVTISPNTTFLAKYKQKLKNYMIYAFLCMWSFNLSFSSN
RIFFVGAYTNVSETKQMKATKYCSLLPMNNIIRGVILTVTTSRDVFLVGAMLTTSTYMVIILSRHQRQCK
HLHSINHMRASPEKRATQTILMLVVFFVVMYWVDFIISTTSFLLWRYDPVILTLQKFVMNAYPTITPLIQ
VSFDNRIIIMLKNLQSKHYHLYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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