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Report for CCDS39498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39498.1 Public Mus musculus 6 Vmn1r23 23 108 98 CCDS HistoryNCBI Gene:171197Re-query CCDS DB by CCDS ID:39498.1Re-query CCDS DB by GeneID:171197See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39498.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000175817.1 ENSMUSP00000135676.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000175817.1Link to Ensembl Protein Viewer:ENSMUSP00000135676.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000175817Re-query CCDS DB by Protein ID:ENSMUSP00000135676
Original member Current member NCBI NM_134179.1 NP_598940.1 Accepted alive Link to Nucleotide Sequence:NM_134179.1Link to Protein Sequence:NP_598940.1Re-query CCDS DB by Nucleotide ID:NM_134179Re-query CCDS DB by Protein ID:NP_598940Link to BLAST:NP_598940.1

Chromosomal Locations for CCDS 39498.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 57925883 57926791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGTCTTCAATCAAGAATGTTCTTTTTATCCAATCTGGACTTGGAGTCCTAGCCAATATGTTTCTGCTGA
TTTTCTATATTCTCATAATCCTAGGTCACAGACCTAAGCCCATGGACCTGATCTCATGTCAATTATCCTT
CGTTCACATAATGATGTTACTCACTGCAGGAGATAATTGGTTTACAGACTTATTTGAGTCACTGAACATT
AAGAATGACTTCATATGTAAGGCAGCTTTTTACACTAGTAGGGTGATGAGAGGACTCTCTATGGGCATCA
CATGCCTCCTGAGTGTGTTCCAGGCTGTCACTATCAGTCCCAGTACCTCACTGTTGACAAAATTTAAACA
TAAACTAAAAAACTACATTATCTATGCTGTTTTCTATATTTGTTTTTTTAATTTCTCGATAAATAGTCAC
ATGATAGTCTATGTTGGTGGTTTTAACAATGTGAGTAAGACCAACCAGATGAGAATCACTAAAACCTGTT
CACATTTTCCCATGAACAACATCATCAAGGAATTGATTTTAACAGTGATAACTTTAAAAGATGTGTTTCT
TGTAGGAGTCATGCTGACCACAAGTATATACATGGTGATTATCTTGTATAGACATCAAAGAAAATGCAAG
CATCTTCATAGCATCAGGCACCTGAGAGCATCCCCTGAGAAAAAGGCCACACAGACCATCCTGCTGCTGG
TGGTTTTCTTTGTGGTCATGTACTGGGTAGACCTCATCATCTCATCCACCTCAGTCCTGTTGTGGATGTA
TGACCCAGTCATCCTGACTGTTCAGAAGTTTGTGGTGAATGCCTATCCCACAATAACTCCTTTGGTACAA
ATCAGTTCTGATAAGAGAATAATCAATGTGCTGAAAAACTTGTGGCTAAAATGCCACCAGACTGTTTAA

Translation (302 aa):
MSSIKNVLFIQSGLGVLANMFLLIFYILIILGHRPKPMDLISCQLSFVHIMMLLTAGDNWFTDLFESLNI
KNDFICKAAFYTSRVMRGLSMGITCLLSVFQAVTISPSTSLLTKFKHKLKNYIIYAVFYICFFNFSINSH
MIVYVGGFNNVSKTNQMRITKTCSHFPMNNIIKELILTVITLKDVFLVGVMLTTSIYMVIILYRHQRKCK
HLHSIRHLRASPEKKATQTILLLVVFFVVMYWVDLIISSTSVLLWMYDPVILTVQKFVVNAYPTITPLVQ
ISSDKRIINVLKNLWLKCHQTV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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