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Report for CCDS26317.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26317.1 Public Mus musculus 13 Vmn1r199 23 108 98 CCDS HistoryNCBI Gene:171247Re-query CCDS DB by CCDS ID:26317.1Re-query CCDS DB by GeneID:171247See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26317.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091732.3 ENSMUSP00000089326.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091732.3Link to Ensembl Protein Viewer:ENSMUSP00000089326.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000091732Re-query CCDS DB by Protein ID:ENSMUSP00000089326
Original member Current member EBI ENSMUST00000227685.1 ENSMUSP00000153918.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227685.1Link to Ensembl Protein Viewer:ENSMUSP00000153918.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227685Re-query CCDS DB by Protein ID:ENSMUSP00000153918
Original member Current member NCBI NM_134213.1 NP_598974.1 Accepted alive Link to Nucleotide Sequence:NM_134213.1Link to Protein Sequence:NP_598974.1Re-query CCDS DB by Nucleotide ID:NM_134213Re-query CCDS DB by Protein ID:NP_598974Link to BLAST:NP_598974.1

Chromosomal Locations for CCDS 26317.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 22382538 22383641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGCATCCACCACTGCCTCTTGAACACCAGAAAATGCTCTCATGCAAAATGTGCTGTTCAGATCCATGTC
CAGCATTACTGATTCTTTCTTTAAAATGTATTTGCATCCTGCACACAAGGAAGGAAGAAATGATTTTGAA
GTTAATTAAGAAAATACTTTTTCTCTTCATGACTGTGCTTGGCATTATGGGAAACATGTCTGTTTCTGTG
AATTACATGTTCAGTTGTTGGGGAAGCCCTGAGAAGAAACCCGTACACCTTATTCTTATCCACCTGGCTT
TTACAAACACTGTCATCCTTCTTGCAAAAGGACTGCCAAAGACTATTGTAGCTTTTGGTTTGAGAAATTT
CCTAGATGACTCAGGCTGTAAGATCATTGTTTACTTGGAAAGGGTGGCCCATGGCCTCTCTCTCTGCGCC
AGCAGTCTCCTCACTGTGGTCCAGGCCATCATCATCAGCCCCAGAGCATCTGGATGGAGGATGCTCAGGC
CAAAGTCTGCATGGCACATCCTTCCATTCTTCTTATTCTTTTGGTTATTCAGTGCATTAATAAATATGAA
CCTAATAAATTCCATCACAAGTACAAGACTGAATATATCACAATTTAAGACTGATAGCAATAATTGTTAT
TTTATGTTACCAAGTCAGAAAATAAAAGGGATTGTTCTCCCTCTCATGGTCCTGAGAGATGCAGTCTTTC
AGGGTGCTATGGGAGGGGCCAGTGGCTACATGGTATTTCTTCTCTATAAGCACCACCAGCATGTCCTCTA
CCTTCAGAACTCCAAGCTTCTTTACAGAACTCCTCCTGAGCTGAGAGCTGCCCAGAGTGTTCTCCTTCTG
ATGTTCTGTTTTGTTTTCTTCTACTGGACAGATTGTGCCTTTTCCCTAATTTTAAGTCTCTCCTCAAAGG
ACAACACCTTAATGGTAAATCCTCGAGAACTTCTGACCCTTGGTTATGCAACGTTTAGTCCCCTGGTGCT
GATTCACAGGGATGGGCTTCTGGTTGAACGTTGGCATGTTCAGTGGGAGAAATTGAGAAAATGTCTCTTA
TTTATATGTTCAACAAGGAAGAAGAAACTCTCAGTTCTGCAATATTGTGGGTAA

Translation (367 aa):
MHPPLPLEHQKMLSCKMCCSDPCPALLILSLKCICILHTRKEEMILKLIKKILFLFMTVLGIMGNMSVSV
NYMFSCWGSPEKKPVHLILIHLAFTNTVILLAKGLPKTIVAFGLRNFLDDSGCKIIVYLERVAHGLSLCA
SSLLTVVQAIIISPRASGWRMLRPKSAWHILPFFLFFWLFSALINMNLINSITSTRLNISQFKTDSNNCY
FMLPSQKIKGIVLPLMVLRDAVFQGAMGGASGYMVFLLYKHHQHVLYLQNSKLLYRTPPELRAAQSVLLL
MFCFVFFYWTDCAFSLILSLSSKDNTLMVNPRELLTLGYATFSPLVLIHRDGLLVERWHVQWEKLRKCLL
FICSTRKKKLSVLQYCG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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