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Report for CCDS26316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26316.1 Public Mus musculus 13 Vmn1r198 23 108 98 CCDS HistoryNCBI Gene:171254Re-query CCDS DB by CCDS ID:26316.1Re-query CCDS DB by GeneID:171254See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26316.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091733.1 ENSMUSP00000089327.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091733.1Link to Ensembl Protein Viewer:ENSMUSP00000089327.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000091733Re-query CCDS DB by Protein ID:ENSMUSP00000089327
Original member Current member EBI ENSMUST00000226909.1 ENSMUSP00000153942.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226909.1Link to Ensembl Protein Viewer:ENSMUSP00000153942.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226909Re-query CCDS DB by Protein ID:ENSMUSP00000153942
Original member Current member EBI ENSMUST00000226786.1 ENSMUSP00000154486.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226786.1Link to Ensembl Protein Viewer:ENSMUSP00000154486.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226786Re-query CCDS DB by Protein ID:ENSMUSP00000154486
Original member Current member NCBI NM_134220.1 NP_598981.1 Accepted alive Link to Nucleotide Sequence:NM_134220.1Link to Protein Sequence:NP_598981.1Re-query CCDS DB by Nucleotide ID:NM_134220Re-query CCDS DB by Protein ID:NP_598981Link to BLAST:NP_598981.1

Chromosomal Locations for CCDS 26316.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 22354346 22355248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGAACTGGAGTAATGTTATCCACACTATAATCTTCCTTTCTCTTATTGGACCTGGAATTATGGGAAATA
TCCTAATGTTTGCGAGACTTGGGTACACTTCTGCCTTGGAGACTGAGAAAAAGCCCATTGACGTAATTCT
CATCCACTTGGTGTTTTCTAATATGATCATCATTTGTACAACAGGGTTGAAAGAGCTTGCCACAGTGTTT
TATTTCAGAAGCTTCCTAGGAGATATTGGCTGCAAAACTACAGTTTATCTGGCAAGGATGGCACGGGGCC
TTTCCATCTGCACCACCTGTCTCCTCAGTGTGGTCCAGGCTGTCACCATCAGTCCCAGGACCACCTTTTG
GACAAAACTCAAACCACAGACATCATGCCAAGTTCTTCCCTTTCTCCTCCTTTTCTGGATTGTTAATGTT
CTCATAAGCTCCAACTTACTCTCTTACATTAAAGGAGGTAGTAGCTTGAACAGGTCTGTGGCTATAATGT
ACATTGGCCACTGCTATATGCTACCATCCAGACACATTATCAAGTGGTTTTTCCTCTCTCTCATGACTCT
TCGTGATGTCATCTTTCAGAGTCTCATGGGCTGGAGCAGTGGTTCCATGGCTCTCCATCTGTATAATCAT
CACAAACGTGTTCTCTATCTTTATAGCTCCAGGTTTGCAAACAACTCCCCTCCAGAAATTAGAGCTACAT
GGAGTATTCTCATTCTTATGGCCTGCTTCCTTTTCTTCTATTGGGTAGATTTCATTCTCTCTTTCTATAC
AGGTTTCACAGTGACACATGATTCTATTTCACTAAATATTAAAACATTTTTAGAACTTGGTTATGCTAGT
TTCAGCCCCTATGTTCTGATTAGCAGAAATGTTCGTGTCCCTAATACCTTACATGCTCACTGA

Translation (300 aa):
MNWSNVIHTIIFLSLIGPGIMGNILMFARLGYTSALETEKKPIDVILIHLVFSNMIIICTTGLKELATVF
YFRSFLGDIGCKTTVYLARMARGLSICTTCLLSVVQAVTISPRTTFWTKLKPQTSCQVLPFLLLFWIVNV
LISSNLLSYIKGGSSLNRSVAIMYIGHCYMLPSRHIIKWFFLSLMTLRDVIFQSLMGWSSGSMALHLYNH
HKRVLYLYSSRFANNSPPEIRATWSILILMACFLFFYWVDFILSFYTGFTVTHDSISLNIKTFLELGYAS
FSPYVLISRNVRVPNTLHAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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