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Report for CCDS20446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20446.1 Public Mus musculus 6 Rho 23 108 98 CCDS HistoryNCBI Gene:212541Re-query CCDS DB by CCDS ID:20446.1Re-query CCDS DB by GeneID:212541See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20446.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032471.8 ENSMUSP00000032471.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032471.8Link to Ensembl Protein Viewer:ENSMUSP00000032471.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032471Re-query CCDS DB by Protein ID:ENSMUSP00000032471
Original member Current member NCBI NM_145383.2 NP_663358.1 Accepted alive Link to Nucleotide Sequence:NM_145383.2Link to Protein Sequence:NP_663358.1Re-query CCDS DB by Nucleotide ID:NM_145383Re-query CCDS DB by Protein ID:NP_663358Link to BLAST:NP_663358.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663358.1 348 P15409 348 100% 0 0

Chromosomal Locations for CCDS 20446.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 115932005 115932365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115933857 115934025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115935109 115935274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115935396 115935635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115936609 115936719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGAACGGCACAGAGGGCCCCAATTTTTATGTGCCCTTCTCCAACGTCACAGGCGTGGTGCGGAGCCCCT
TCGAGCAGCCGCAGTACTACCTGGCGGAACCATGGCAGTTCTCCATGCTGGCAGCGTACATGTTCCTGCT
CATCGTGCTGGGCTTCCCCATCAACTTCCTCACGCTCTACGTCACCGTACAGCACAAGAAGCTGCGCACA
CCCCTCAACTACATCCTGCTCAACTTGGCCGTGGCTGACCTCTTCATGGTCTTCGGAGGATTCACCACCA
CCCTCTACACATCACTCCATGGCTACTTCGTCTTTGGGCCCACAGGCTGTAATCTCGAGGGCTTCTTTGC
CACACTTGGAGGTGAAATCGCCCTGTGGTCCCTGGTGGTCCTGGCCATTGAGCGCTACGTGGTGGTCTGC
AAGCCGATGAGCAACTTCCGCTTCGGGGAGAATCACGCTATCATGGGTGTGGTCTTCACCTGGATCATGG
CGTTGGCCTGTGCTGCTCCCCCACTCGTTGGCTGGTCCAGGTACATCCCTGAGGGCATGCAATGTTCATG
CGGGATTGACTACTACACACTCAAGCCTGAGGTCAACAACGAATCCTTTGTCATCTACATGTTCGTGGTC
CACTTCACCATTCCTATGATCGTCATCTTCTTCTGCTATGGGCAGCTGGTCTTCACAGTCAAGGAGGCGG
CTGCCCAGCAGCAGGAGTCAGCCACCACTCAGAAGGCAGAGAAGGAAGTCACCCGCATGGTTATCATCAT
GGTCATCTTCTTCCTGATCTGCTGGCTTCCCTACGCCAGTGTGGCCTTCTACATCTTCACCCACCAGGGC
TCCAACTTCGGCCCCATCTTCATGACTCTGCCAGCTTTCTTTGCTAAGAGCTCTTCCATCTATAACCCGG
TCATCTACATCATGTTGAACAAGCAGTTCCGGAACTGTATGCTCACCACGCTGTGCTGCGGCAAGAATCC
ACTGGGAGATGACGACGCCTCTGCCACCGCTTCCAAGACGGAGACCAGCCAGGTGGCTCCAGCCTAA

Translation (348 aa):
MNGTEGPNFYVPFSNVTGVVRSPFEQPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVC
KPMSNFRFGENHAIMGVVFTWIMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVV
HFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIFFLICWLPYASVAFYIFTHQG
SNFGPIFMTLPAFFAKSSSIYNPVIYIMLNKQFRNCMLTTLCCGKNPLGDDDASATASKTETSQVAPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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