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Report for CCDS49119.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49119.1 Public Mus musculus 12 Vipas39 23 108 98 CCDS HistoryNCBI Gene:104799Re-query CCDS DB by CCDS ID:49119.1Re-query CCDS DB by GeneID:104799See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49119.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072744.14 ENSMUSP00000072527.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072744.14Link to Ensembl Protein Viewer:ENSMUSP00000072527.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000072744Re-query CCDS DB by Protein ID:ENSMUSP00000072527
Original member Current member NCBI NM_001142580.1 NP_001136052.1 Accepted alive Link to Nucleotide Sequence:NM_001142580.1Link to Protein Sequence:NP_001136052.1Re-query CCDS DB by Nucleotide ID:NM_001142580Re-query CCDS DB by Protein ID:NP_001136052Link to BLAST:NP_001136052.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136052.1 491 Q8BGQ1-1 491 100% 0 0

Chromosomal Locations for CCDS 49119.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 87239816 87239836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87241237 87241341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87241937 87242026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87242486 87242572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87244455 87244544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87244840 87244881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87246129 87246263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87246819 87246894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87249388 87249461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87250477 87250504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87251716 87251818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87252635 87252668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87253166 87253258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87254230 87254286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87256485 87256549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87257415 87257453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87259081 87259221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87260632 87260734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87263905 87263997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGAACCGGACAAAAGGTGATGAGGAGGAATATTGGAACAGCTCCAAGTTCAAGGCTTTCACTTTTGATG
ATGAAGATGATGAGCTCTCACAGTTAAAGGAATCCAAACGCGCAGTGAATAGCCTTCGAGACATCGTGGA
TGACGACGATGACGATGACCTGGAGAGAGTCAGCTGGACTGGAGAACCTGTGGGAAGTATCTCATGGTCC
ATCAAAGAGACTGCTGGGAGTAGCGGGTCAACCCCTGAGGGACGTGAACAGCTAAAGGGCCGAAACAGCT
TCTACACACAGCTACCCAAACCTCCTTCTACTTACTCCCTCAGCAGCTTCTTCAGAGGTAGAACTAGACC
TGGGAGTTTCCAGTCCCTTTCTGATGCTCTGTCAGACACACCTGCCAAAAGTTATGCTCCAGAGCTGGGG
AGGCCTAAGGGAGAATACAGGGATTACAGCAATGACTGGAGCCTCAGTGATACAGTGCAACGCCTCCGCC
GGGGCAAGGTCTGTTCACTAGAGCGCTTCCGCTCCCTCCAGGATAAGCTGCAGCTCCTAGAGGAGGCAGT
AAGCATGCATGATGGGAACGTCATCACTGCAGTTCTGATCTTCCTGAAGAGGACCCTGAGCAAAGAGATC
CTTTTTCGAGAGCTGGAGGTACGCCAGGTCGCACTGAGACATCTCATTCATTTTCTTAAAGAAATAGGGG
ACCAAAAGCTGCTTTTAGATCTCTTCAGGTTCCTAGATAGAGCAGAAGAACTGGCGCTATCCCATTATCG
AGAGCACTTGAACATTCAGGACCCTGAAAAACGAAAAGAATTTCTTAAGACTTGCATTGGTTTGCCATTT
TCAGCAGAAGACGCTGCGCATGTACAAGACCATTACACCCTGCTGGAGCGCCAGATCATCATCGAGGCAA
ACGACCGGCACCTGGAGTCTTCAGGGCAGACTGATATCTTCCGGAAGCACCCCCGTAAAGCTTCCATTCT
CAACATGCCGTTAGTGACGACACTCTTCTACGCCTGCTTCTATCACTACACGGAGTCTGAGGGAACCTTC
AGCAGTCCCATCAACCTGAAGAAAACATTCAAGATCCCAGACAAACAGTATGTGCTGACAGCCTTGGCTG
CGCGTGCCAAGCTGAGAGCCTGGAATGACGTTGATGCCCTGTTCACCACAAAGAACTGGTTGGGTTACAC
CAAGAAGAGAGCACCCATTGGCTTCCATCGAGTTGTGGAAATTTTGCACAAGAACAGTGCCCCTGTCCAG
ATACTGCAGGAATATGTCAATCTGGTGGAAGATGTGGACACCAAGTTGAACTTAGCTACTAAGTTCAAGT
GCCATGATGTCGTCATTGATACTTGCCGAGACCTGAAGGATCGTCAGCAGTTGCTTGCATACAGGAGCAA
AGTAGACAAAGGATCCGCCGAGGAAGAGAAGATTGACGCCATTCTCAGCAGCTCGCAAATTCGATGGAAG
AACTAA

Translation (491 aa):
MNRTKGDEEEYWNSSKFKAFTFDDEDDELSQLKESKRAVNSLRDIVDDDDDDDLERVSWTGEPVGSISWS
IKETAGSSGSTPEGREQLKGRNSFYTQLPKPPSTYSLSSFFRGRTRPGSFQSLSDALSDTPAKSYAPELG
RPKGEYRDYSNDWSLSDTVQRLRRGKVCSLERFRSLQDKLQLLEEAVSMHDGNVITAVLIFLKRTLSKEI
LFRELEVRQVALRHLIHFLKEIGDQKLLLDLFRFLDRAEELALSHYREHLNIQDPEKRKEFLKTCIGLPF
SAEDAAHVQDHYTLLERQIIIEANDRHLESSGQTDIFRKHPRKASILNMPLVTTLFYACFYHYTESEGTF
SSPINLKKTFKIPDKQYVLTALAARAKLRAWNDVDALFTTKNWLGYTKKRAPIGFHRVVEILHKNSAPVQ
ILQEYVNLVEDVDTKLNLATKFKCHDVVIDTCRDLKDRQQLLAYRSKVDKGSAEEEKIDAILSSSQIRWK
N


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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