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Report for CCDS19158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19158.1 Public Mus musculus 5 Cimip2c 23 108 98 CCDS HistoryNCBI Gene:75434Re-query CCDS DB by CCDS ID:19158.1Re-query CCDS DB by GeneID:75434See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19158.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031078.9 ENSMUSP00000031078.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031078.9Link to Ensembl Protein Viewer:ENSMUSP00000031078.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000031078Re-query CCDS DB by Protein ID:ENSMUSP00000031078
Original member NCBI NM_029285.1 NP_083561.1 Updated not alive Link to Nucleotide Sequence:NM_029285.1Link to Protein Sequence:NP_083561.1Re-query CCDS DB by Nucleotide ID:NM_029285Re-query CCDS DB by Protein ID:NP_083561
Current member NCBI NM_029285.2 NP_083561.1 Accepted alive Link to Nucleotide Sequence:NM_029285.2Link to Protein Sequence:NP_083561.1Re-query CCDS DB by Nucleotide ID:NM_029285Re-query CCDS DB by Protein ID:NP_083561Link to BLAST:NP_083561.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083561.1 200 Q9DAS2-1 200 100% 0 0

Chromosomal Locations for CCDS 19158.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 30466111 30466184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30480385 30480655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30482076 30482188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30483868 30484012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGCCTTCCGTAGCGCGGGCACACTAATGACCGAATTTAATGCCGCCTTCGTGCCCCCAGCTCTCATGC
CCGGGTACAAAGGCCATGTTCCCGGTGTGGCTTCCTCCTTTGGCTCTTCTTATGGCAACACCACCTTCAA
GTACTTCCAGGACCTCCGCAACACAGGCTTGGAGAAGAGCTATGCGCTCCTCAGTGGGGGTTGCTTTCCC
ACCATCTTCTCCCCTAACTCCCCCCTGGTTCTGACTGATAACTCACAGAACTGGGATCGATGGCTGCACC
AGCCCACCTACAGCCGATCCAACCAGGACAACGGGCGCACCACTGAGCTCACTAACTTTTACAAGACAGT
CCAGCAGCAGCGGAAGTATTACCAAGACAAGACTGGCATTCTGTCCCGTGTTCCTTACTTTGTACTTCCT
GTGAAGGAGCCGGACCGGTACCCCCTACCCACCGACCTGCCTCCTCTGAGTGAGAAGAGTAAGTGGAACC
TACTAAGATTATCCCCTGACTACAAGAGGACCTACCAGACCTTCCCATCAGGGAAGAGAGTTTCCTCTCA
AGAGCGCCAAAGGCGGGACCTTTACTTCGAGTTCAGAGCCTGA

Translation (200 aa):
MAFRSAGTLMTEFNAAFVPPALMPGYKGHVPGVASSFGSSYGNTTFKYFQDLRNTGLEKSYALLSGGCFP
TIFSPNSPLVLTDNSQNWDRWLHQPTYSRSNQDNGRTTELTNFYKTVQQQRKYYQDKTGILSRVPYFVLP
VKEPDRYPLPTDLPPLSEKSKWNLLRLSPDYKRTYQTFPSGKRVSSQERQRRDLYFEFRA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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