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Report for CCDS49179.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49179.2 Reviewed, update pending Mus musculus 12 Rcor1 23 108 98 CCDS HistoryNCBI Gene:217864Re-query CCDS DB by CCDS ID:49179.2See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 49179.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084968.13 ENSMUSP00000082034.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084968.13Link to Ensembl Protein Viewer:ENSMUSP00000082034.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000084968Re-query CCDS DB by Protein ID:ENSMUSP00000082034
Original member Current member NCBI NM_198023.3 NP_932140.2 Pending alive Link to Nucleotide Sequence:NM_198023.3Link to Protein Sequence:NP_932140.2Re-query CCDS DB by Nucleotide ID:NM_198023Re-query CCDS DB by Protein ID:NP_932140Link to BLAST:NP_932140.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932140.2 480 Q8CFE3 480 100% 0 0

Chromosomal Locations for CCDS 49179.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 111039606 111039888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111039962 111040021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111081724 111081807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111093081 111093133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111097455 111097616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111099920 111100038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111101630 111101708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111103611 111103805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111108572 111108649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111108854 111108911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111109781 111110010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111111874 111111915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGCCGGCCATGGTGGAGAAGGGCCCCGAGGTCTCAGGGAAGCGGCGAGGGAGGAACACGGCGGCCTCCG
CAGCCTCGGCCGCCGCCTCGGCCGCCTCGGCCGCCGCCTCAGCCGCCGCCTCGGCCGGCACCGCCTCCGC
CTCGGCCGCCGCCGCCGCCTCGGCCGCCGCCGCCCCCAATAATGGCCAGAATAAAAGTTTGGCGGCGGCG
GCTCCCAACGGGAACAGCGGCAGCAACTCCTGGGAGGAAGGCAGCTCGGGCTCGTCCAGCGACGAGGAGC
ACGGTGGCGGTGGCATGCGGGTGGGACCCCAGTACCAAGCGGCGGTGCCCGACTTCGATCCTGCCAAACT
GGCAAGGCGCAGTCAAGAACGAGACAATCTTGGCATGTTGGTCTGGTCACCTAATCAGAGTCTTTCTGAA
GCAAAACTGGACGAGTACATCGCTATCGCCAAAGAGAAGCACGGGTACAACATGGAGCAGGCTCTTGGGA
TGCTCTTTTGGCATAAGCATAATATTGAAAAATCATTGGCCGACTTGCCCAACTTCACCCCCTTTCCAGA
TGAGTGGACTGTAGAAGACAAAGTCTTATTTGAGCAAGCCTTTAGTTTTCATGGGAAAACTTTTCATAGG
ATCCAGCAAATGCTTCCTGATAAATCCATAGCAAGTTTGGTGAAGTTTTACTACTCTTGGAAGAAAACTA
GAACTAAAACAAGTGTGATGGATCGCCATGCTCGGAAACAGAAGCGGGAGCGGGAGGAAAGTGAGGATGA
ACTGGAAGAAACAAACGGCAGTAATCCCGTTGACATTGAGATTGACCCAAACAAGGAAAGCAAAAAGGAG
GTGCCCCCTACAGAGACAGTTCCTCAGGTCAAAAAAGAAAAGCACAGCACACAAGCTAAAAATAGAGCAA
AAAGGAAACCTCCGAAAGGCATGTTTCTTTCTCAAGAAGATGTGGAGGCTGTGTCTGCTAATGCTACTGC
TGCGACCACGGTGCTGAGACAGCTGGACATGGAGCTGGTCTCCATCAAACGACAGATTCAGAACATCAAG
CAGACGAACAGTGCTCTTAAAGAGAAGCTTGATGGTGGGATAGAGCCTTACCGACTCCCAGAGGTTATTC
AAAAATGCAACGCTCGCTGGACAACGGAAGAGCAGCTTCTCGCCGTACAAGCCATTAGGAAATATGGGCG
AGATTTTCAGGCGATCTCAGATGTGATTGGGAACAAGTCAGTTGTTCAGGTGAAAAACTTTTTTGTAAAT
TATCGACGCCGCTTCAACATAGATGAAGTTTTACAAGAATGGGAAGCAGAACATGGGAAAGACGAGACCA
ATGGACCTGCTAACCAGAAACCTGTCAAGTCCCCAGAAAGCTCCATCAAGATCCCGGAGGAGGAAGATGA
GGCTGCTTCTGTCCTCGACGTAAGATACGCATCTGCCTCATGA

Translation (480 aa):
MPAMVEKGPEVSGKRRGRNTAASAASAAASAASAAASAAASAGTASASAAAAASAAAAPNNGQNKSLAAA
APNGNSGSNSWEEGSSGSSSDEEHGGGGMRVGPQYQAAVPDFDPAKLARRSQERDNLGMLVWSPNQSLSE
AKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHR
IQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREESEDELEETNGSNPVDIEIDPNKESKKE
VPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIK
QTNSALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN
YRRRFNIDEVLQEWEAEHGKDETNGPANQKPVKSPESSIKIPEEEDEAASVLDVRYASAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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