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Report for CCDS46247.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46247.1 Public Homo sapiens 2 CCDC121 24 110 108 CCDS HistoryNCBI Gene:79635Re-query CCDS DB by CCDS ID:46247.1Re-query CCDS DB by GeneID:79635See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46247.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394775.3 ENSP00000412150.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394775.3Link to Ensembl Protein Viewer:ENSP00000412150.2Re-query CCDS DB by Nucleotide ID:ENST00000394775Re-query CCDS DB by Protein ID:ENSP00000412150
Original member Current member NCBI NM_001142683.3 NP_001136155.1 Accepted alive Link to Nucleotide Sequence:NM_001142683.3Link to Protein Sequence:NP_001136155.1Re-query CCDS DB by Nucleotide ID:NM_001142683Re-query CCDS DB by Protein ID:NP_001136155Link to BLAST:NP_001136155.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136155.1 440 Q6ZUS5-2 440 100% 0 0

Chromosomal Locations for CCDS 46247.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27626963 27627917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27628396 27628763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGGGGTCCCGAGGGCAGGGCTCACACAGCAAGAAAACGAGGAGCATGCCTGTCATTTTGAGCCCACAGA
GAACGGGGAGCGGAGCCACTGGAGGACCGGCTGCTCGGGCTTATTCGGTAGCCGAGGCGGTTAAACAGTT
CAGGGCTGGACCAGCCGGGACTGGAGCAGGGTGCAGTCTCCAGGGTTGCTGGGCAGCACCGAGACCCTTT
GAGCACCGAACGAATAAACTACGGGAGCTTTCCACACTTGCACATTGTTCCCGCGAGTTGCAGACGCAGG
TTCCTGATGCTAGCGCTCATTCCTTGGCAGTCACCCTCAGTGAACTACACAGTTGCCGTGACCTTCAGGA
TGAATGCTTGGATTCCAGGTTTGCTGAGGGCCCCAGAAGGCTCCTTCCACCGTATCATAGTCTAATAAAT
AATTTTGTCAAGCCAGAGAAGCTAACAAAGGTAGAGACAAGGCTTAAAGAAAAGATAGTGGCGGAAATGA
CGGATCTGAACAAGCATATAAAACAAGCTCAAACCCAGCGGAAACAGCTACTGGAGGAATCCAGGGAGCT
ACACCGAGAAAAGTTACTTGTCCAGGCTGAAAACAGATTCTTTCTGGAATACCTGACTAACAAAACTGAA
GAGTACACAGAGCAACCTGAGAAGGTATGGAACAGCTATTTACAAAAAAGTGGAGAGATTGAACGAAGAA
GACAAGAATCAGCCTCCAGATATGCAGAACAAATTTCAGTGCTTAAAACAGCGCTCTTGCAAAAGGAAAA
TATCCAATCCAGTTTGAAGCGGAAGTTGCAGGCAATGAGGGACATTGCTATATTAAAGGAAAAGCAGGAG
AAAGAAATACAGACATTACAGGAGGAGACAAAGAAAGTCCAAGCTGAGACAGCTTCAAAGACACGGGAAG
TACAGGCCCAGCTCCTCCAGGAGAAAAGATTACTGGAGAAACAACTGAGCGAGCCAGACAGGAGGCTACT
GGGAAAGAGAAAAAGAAGAGAGCTTAATATGAAGGCCCAGGCCTTGAAGTTGGCAGCAAAGCGGTTTATT
TTTGAATACTCCTGTGGCATCAACAGAGAGAACCAGCAGTTCAAGAAGGAATTACTGCAGCTAATTGAGC
AAGCCCAGAAACTAACGGCTACTCAAAGCCACTTAGAAAACAGGAAGCAGCAGCTGCAGCAGGAACAGTG
GTATCTGGAGTCCTTAATCCAGGCGAGGCAGAGACTGCAAGGAAGTCATAATCAGTGCCTAAATAGACAG
GATGTTCCAAAGACCACACCCAGTCTTCCCCAAGGCACCAAATCAAGGATTAATCCAAAGTAA

Translation (440 aa):
MGSRGQGSHSKKTRSMPVILSPQRTGSGATGGPAARAYSVAEAVKQFRAGPAGTGAGCSLQGCWAAPRPF
EHRTNKLRELSTLAHCSRELQTQVPDASAHSLAVTLSELHSCRDLQDECLDSRFAEGPRRLLPPYHSLIN
NFVKPEKLTKVETRLKEKIVAEMTDLNKHIKQAQTQRKQLLEESRELHREKLLVQAENRFFLEYLTNKTE
EYTEQPEKVWNSYLQKSGEIERRRQESASRYAEQISVLKTALLQKENIQSSLKRKLQAMRDIAILKEKQE
KEIQTLQEETKKVQAETASKTREVQAQLLQEKRLLEKQLSEPDRRLLGKRKRRELNMKAQALKLAAKRFI
FEYSCGINRENQQFKKELLQLIEQAQKLTATQSHLENRKQQLQQEQWYLESLIQARQRLQGSHNQCLNRQ
DVPKTTPSLPQGTKSRINPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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