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Report for CCDS31060.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31060.1 Public Homo sapiens 1 ARID4B 24 110 108 CCDS HistoryNCBI Gene:51742Re-query CCDS DB by CCDS ID:31060.1Re-query CCDS DB by GeneID:51742See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31060.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000349213.7 ENSP00000264184.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000349213.7Link to Ensembl Protein Viewer:ENSP00000264184.4Re-query CCDS DB by Nucleotide ID:ENST00000349213Re-query CCDS DB by Protein ID:ENSP00000264184
Original member Current member NCBI NM_031371.4 NP_112739.2 Accepted alive Link to Nucleotide Sequence:NM_031371.4Link to Protein Sequence:NP_112739.2Re-query CCDS DB by Nucleotide ID:NM_031371Re-query CCDS DB by Protein ID:NP_112739Link to BLAST:NP_112739.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112739.2 1226 Q4LE39-2 1226 100% 0 0

Chromosomal Locations for CCDS 31060.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 235168525 235168652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235172618 235172764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235175184 235175399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235177800 235177913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235181585 235182793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235194013 235194211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235196031 235196115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235219793 235219968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235220302 235220545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235221565 235221662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235223166 235223260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235224703 235224775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235229231 235229385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235231113 235231189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235234413 235234492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235240313 235240451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235246420 235246511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235252730 235252809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235255660 235255750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235257160 235257225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235260642 235260752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235326914 235326919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3681 nt):
ATGAAGGCCCTTGATGAGCCTCCCTATTTGACAGTGGGCACTGATGTGAGTGCTAAATACAGAGGAGCCT
TTTGTGAAGCCAAGATCAAGACAGCAAAAAGACTTGTCAAAGTCAAGGTGACATTTAGACATGATTCTTC
AACAGTGGAAGTTCAGGATGACCACATAAAGGGCCCACTAAAGGTAGGAGCTATTGTGGAAGTGAAGAAT
CTTGATGGTGCATATCAGGAAGCTGTTATCAATAAACTAACAGATGCGAGTTGGTACACTGTAGTTTTTG
ATGACGGAGATGAGAAGACACTGAGACGATCTTCACTGTGCCTGAAAGGAGAGAGGCATTTTGCTGAAAG
TGAAACATTAGACCAGCTCCCACTCACCAACCCTGAGCATTTTGGCACTCCAGTCATAGGAAAGAAAACA
AATAGAGGAAGAAGATCTAATCATATACCAGAGGAAGAGTCTTCATCATCCTCCAGTGATGAAGATGAGG
ATGATAGGAAACAGATTGATGAGCTACTAGGCAAAGTTGTATGTGTAGATTACATTAGTTTGGATAAAAA
GAAAGCACTGTGGTTTCCTGCATTGGTGGTTTGTCCTGATTGTAGTGATGAGATTGCTGTAAAAAAGGAC
AATATTCTTGTTCGATCTTTCAAAGATGGAAAATTTACTTCAGTTCCAAGAAAAGATGTCCATGAAATTA
CTAGTGACACTGCACCAAAGCCTGATGCTGTTTTAAAGCAAGCCTTTGAACAGGCACTTGAATTTCACAA
AAGTAGAACTATTCCTGCTAACTGGAAGACTGAATTGAAAGAAGATAGCTCTAGCAGTGAAGCAGAGGAA
GAAGAGGAGGAGGAAGATGATGAAAAAGAAAAGGAGGATAATAGCAGTGAAGAAGAAGAAGAAATAGAAC
CATTTCCAGAAGAAAGGGAGAACTTTCTTCAGCAATTGTACAAATTTATGGAAGATAGAGGTACACCTAT
TAACAAACGACCTGTACTTGGATATCGAAATTTGAATCTCTTTAAGTTATTCAGACTTGTACACAAACTT
GGAGGATTTGATAATATTGAAAGTGGAGCTGTTTGGAAACAAGTCTACCAAGATCTTGGAATCCCTGTCT
TAAATTCAGCTGCAGGATACAATGTTAAATGTGCTTATAAAAAATACTTATATGGTTTTGAGGAGTACTG
TAGATCAGCCAACATTGAATTTCAGATGGCATTGCCAGAGAAAGTTGTTAACAAGCAATGTAAGGAGTGT
GAAAATGTAAAAGAAATAAAAGTTAAGGAGGAAAATGAAACAGAGATCAAAGAAATAAAGATGGAGGAGG
AGAGGAATATAATACCAAGAGAAGAAAAGCCTATTGAGGATGAAATTGAAAGAAAAGAAAATATTAAGCC
CTCTCTGGGAAGTAAAAAGAATTTATTAGAATCTATACCTACACATTCTGATCAGGAAAAAGAAGTTAAC
ATTAAAAAACCAGAAGACAATGAAAATCTGGATGACAAAGATGATGACACAACTAGGGTAGATGAATCCC
TCAACATAAAGGTAGAAGCTGAGGAAGAAAAAGCAAAATCTGGATACGATGAATGGATTAAAGCAGATAA
AATAGTAAGACCTGCTGATAAAAATGTGCCAAAGATAAAACATCGGAAGAAAATAAAGAATAAATTAGAC
AAAGAAAAAGACAAAGATGAAAAATACTCTCCAAAAAACTGTAAACTTCGGCGCTTGTCCAAACCACCAT
TTCAGACAAATCCATCTCCTGAAATGGTATCCAAACTGGATCTCACTGATGCCAAAAACTCTGATACTGC
TCATATTAAGTCCATAGAAATTACTTCGATCCTTAATGGACTTCAAGCTTCTGAAAGTTCTGCTGAAGAC
AGTGAGCAGGAAGATGAGAGAGGTGCTCAAGACATGGATAATAATGGCAAAGAGGAATCTAAGATTGATC
ATTTGACCAACAACAGAAATGATCTTATTTCAAAGGAGGAACAGAACAGTTCATCTTTGCTAGAAGAAAA
CAAAGTTCATGCAGATTTGGTAATATCCAAACCAGTGTCAAAATCTCCAGAAAGATTAAGGAAAGATATA
GAAGTATTATCCGAAGATACTGATTATGAAGAAGATGAAGTCACAAAAAAGAGAAAGGATGTCAAGAAGG
ACACAACAGATAAATCTTCAAAACCACAAATAAAACGTGGTAAAAGAAGGTATTGCAATACAGAAGAGTG
TCTAAAAACTGGATCACCTGGCAAAAAGGAAGAGAAGGCCAAGAACAAAGAATCACTTTGCATGGAAAAC
AGTAGCAACAGCTCTTCAGATGAAGATGAAGAAGAAACAAAAGCAAAGATGACACCAACTAAGAAATACA
ATGGTTTGGAGGAAAAAAGAAAATCTCTACGGACAACTGGTTTCTATTCAGGATTTTCAGAAGTGGCAGA
AAAAAGGATTAAACTTTTAAATAACTCTGATGAAAGACTTCAAAACAGCAGGGCCAAAGATCGAAAAGAT
GTCTGGTCAAGTATTCAGGGACAGTGGCCTAAAAAAACGCTGAAAGAGCTTTTTTCAGACTCTGATACTG
AGGCTGCAGCTTCCCCACCGCATCCTGCCCCAGAGGAGGGGGTGGCAGAGGAGTCACTGCAGACTGTGGC
TGAAGAGGAGAGTTGTTCACCCAGTGTAGAACTAGAAAAACCACCTCCAGTCAATGTCGATAGTAAACCC
ATTGAAGAAAAAACAGTAGAGGTCAATGACAGAAAAGCAGAATTTCCAAGTAGTGGCAGTAATTCAGTGC
TAAATACCCCTCCTACTACACCTGAATCGCCTTCATCAGTCACTGTAACAGAAGGCAGCCGGCAGCAGTC
TTCTGTAACAGTATCAGAACCACTGGCTCCAAACCAAGAAGAGGTTCGAAGTATCAAGAGTGAAACTGAT
AGCACAATTGAGGTGGATAGTGTTGCTGGGGAGCTCCAAGACCTCCAGTCTGAAGGGAATAGCTCGCCAG
CAGGTTTTGATGCCAGTGTGAGCTCAAGCAGTAGTAATCAGCCAGAACCAGAACATCCTGAAAAAGCCTG
TACAGGTCAGAAAAGAGTGAAAGATGCTCAGGGAGGAGGAAGTTCATCAAAAAAGCAGAAAAGAAGCCAT
AAAGCAACAGTGGTAAACAACAAAAAGAAGGGAAAAGGCACAAATAGTAGTGATAGTGAAGAACTTTCAG
CTGGTGAAAGTATAACTAAGAGTCAGCCAGTCAAATCAGTTTCCACTGGAATGAAGTCTCATAGTACCAA
ATCTCCCGCAAGGACGCAGTCTCCAGGAAAATGTGGAAAGAATGGTGATAAGGATCCTGATCTCAAGGAA
CCCAGTAATCGATTACCCAAAGTTTACAAATGGAGTTTTCAGATGTCGGACCTGGAAAATATGACAAGTG
CCGAACGCATCACAATTCTTCAAGAAAAACTTCAAGAAATCAGAAAACATTATCTGTCATTAAAATCTGA
AGTAGCTTCCATTGATCGGAGGAGAAAGCGTTTAAAGAAGAAAGAGAGAGAAAGTGCTGCTACATCCTCA
TCCTCCTCTTCACCTTCATCCAGTTCCATAACAGCTGCTGTTATGTTAACTTTAGCTGAACCGTCAATGT
CCAGCGCATCACAAAATGGAATGTCAGTTGAGTGCAGGTGA

Translation (1226 aa):
MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGPLKVGAIVEVKN
LDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETLDQLPLTNPEHFGTPVIGKKT
NRGRRSNHIPEEESSSSSSDEDEDDRKQIDELLGKVVCVDYISLDKKKALWFPALVVCPDCSDEIAVKKD
NILVRSFKDGKFTSVPRKDVHEITSDTAPKPDAVLKQAFEQALEFHKSRTIPANWKTELKEDSSSSEAEE
EEEEEDDEKEKEDNSSEEEEEIEPFPEERENFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKL
GGFDNIESGAVWKQVYQDLGIPVLNSAAGYNVKCAYKKYLYGFEEYCRSANIEFQMALPEKVVNKQCKEC
ENVKEIKVKEENETEIKEIKMEEERNIIPREEKPIEDEIERKENIKPSLGSKKNLLESIPTHSDQEKEVN
IKKPEDNENLDDKDDDTTRVDESLNIKVEAEEEKAKSGYDEWIKADKIVRPADKNVPKIKHRKKIKNKLD
KEKDKDEKYSPKNCKLRRLSKPPFQTNPSPEMVSKLDLTDAKNSDTAHIKSIEITSILNGLQASESSAED
SEQEDERGAQDMDNNGKEESKIDHLTNNRNDLISKEEQNSSSLLEENKVHADLVISKPVSKSPERLRKDI
EVLSEDTDYEEDEVTKKRKDVKKDTTDKSSKPQIKRGKRRYCNTEECLKTGSPGKKEEKAKNKESLCMEN
SSNSSSDEDEEETKAKMTPTKKYNGLEEKRKSLRTTGFYSGFSEVAEKRIKLLNNSDERLQNSRAKDRKD
VWSSIQGQWPKKTLKELFSDSDTEAAASPPHPAPEEGVAEESLQTVAEEESCSPSVELEKPPPVNVDSKP
IEEKTVEVNDRKAEFPSSGSNSVLNTPPTTPESPSSVTVTEGSRQQSSVTVSEPLAPNQEEVRSIKSETD
STIEVDSVAGELQDLQSEGNSSPAGFDASVSSSSSNQPEPEHPEKACTGQKRVKDAQGGGSSSKKQKRSH
KATVVNNKKKGKGTNSSDSEELSAGESITKSQPVKSVSTGMKSHSTKSPARTQSPGKCGKNGDKDPDLKE
PSNRLPKVYKWSFQMSDLENMTSAERITILQEKLQEIRKHYLSLKSEVASIDRRRKRLKKKERESAATSS
SSSSPSSSSITAAVMLTLAEPSMSSASQNGMSVECR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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