NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7131.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7131.1 Public Homo sapiens 10 ARL5B 24 110 108 CCDS HistoryNCBI Gene:221079Re-query CCDS DB by CCDS ID:7131.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7131.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377275.4 ENSP00000366487.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377275.4Link to Ensembl Protein Viewer:ENSP00000366487.3Re-query CCDS DB by Nucleotide ID:ENST00000377275Re-query CCDS DB by Protein ID:ENSP00000366487
Original member Current member NCBI NM_178815.5 NP_848930.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178815.5Link to Protein Sequence:NP_848930.1Re-query CCDS DB by Nucleotide ID:NM_178815Re-query CCDS DB by Protein ID:NP_848930Link to BLAST:NP_848930.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848930.1 179 Q96KC2 179 100% 0 0

Chromosomal Locations for CCDS 7131.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 18659638 18659683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18666575 18666635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18668530 18668677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18672622 18672705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18673984 18674135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18675168 18675216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (540 nt):
ATGGGGCTGATCTTCGCCAAACTGTGGAGCCTCTTCTGTAACCAAGAACACAAAGTAATTATAGTGGGAC
TGGATAATGCAGGGAAAACCACCATTCTTTACCAATTCTTAATGAATGAAGTGGTTCATACTTCTCCAAC
CATAGGAAGCAATGTTGAAGAAATAGTTGTGAAGAACACTCATTTTCTTATGTGGGATATTGGTGGTCAG
GAGTCTCTGCGATCATCCTGGAACACATATTACTCAAATACAGAGTTCATCATTCTTGTTGTTGATAGCA
TTGACAGGGAACGACTAGCTATTACAAAAGAAGAATTATACAGAATGTTGGCTCATGAGGATTTACGGAA
GGCTGCAGTCCTTATCTTTGCAAATAAACAGGATATGAAAGGGTGTATGACAGCAGCTGAAATCTCGAAA
TACCTCACCCTTAGTTCAATTAAGGATCATCCATGGCACATTCAATCCTGCTGTGCTCTCACAGGAGAAG
GGTTATGCCAAGGTCTAGAGTGGATGACCTCCCGGATTGGTGTGAGATAA

Translation (179 aa):
MGLIFAKLWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQ
ESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISK
YLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH