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Report for CCDS27248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27248.1 Public Mus musculus 14 Pdlim2 23 108 98 CCDS HistoryNCBI Gene:213019Re-query CCDS DB by CCDS ID:27248.1Re-query CCDS DB by GeneID:213019See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022681.10 ENSMUSP00000022681.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022681.10Link to Ensembl Protein Viewer:ENSMUSP00000022681.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000022681Re-query CCDS DB by Protein ID:ENSMUSP00000022681
Original member Current member EBI ENSMUST00000153735.7 ENSMUSP00000116200.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153735.7Link to Ensembl Protein Viewer:ENSMUSP00000116200.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000153735Re-query CCDS DB by Protein ID:ENSMUSP00000116200
Original member Current member NCBI NM_001253736.1 NP_001240665.1 Accepted alive Link to Nucleotide Sequence:NM_001253736.1Link to Protein Sequence:NP_001240665.1Re-query CCDS DB by Nucleotide ID:NM_001253736Re-query CCDS DB by Protein ID:NP_001240665Link to BLAST:NP_001240665.1
Original member Current member NCBI NM_145978.2 NP_666090.1 Accepted alive Link to Nucleotide Sequence:NM_145978.2Link to Protein Sequence:NP_666090.1Re-query CCDS DB by Nucleotide ID:NM_145978Re-query CCDS DB by Protein ID:NP_666090Link to BLAST:NP_666090.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240665.1 349 Q8R1G6-1 349 100% 0 0
NP_666090.1 349 Q8R1G6-1 349 100% 0 0

Chromosomal Locations for CCDS 27248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 70164616 70164793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70166090 70166207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70167661 70167788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70167965 70168044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70171220 70171298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70171460 70171611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70171715 70171784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70174337 70174488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70175213 70175305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGGCGTTGACTGTGGATGTGGCAGGACCAGCACCTTGGGGCTTCCGAATTAGCGGGGGCAGAGATTTCC
ACACACCCATCATTGTGACCAAGGTCACAGAGCGGGGCAAGGCTGAAGCAGCTGATCTCCGGCCTGGCGA
CATCATTGTGGCCATCAATGGACAGAGTGCAGAGAACATGCTACACGCGGAGGCCCAAAGCAAGATCCGA
CAGAGCGCCTCACCCCTAAGACTGCAGCTGGACCGGTCCCAAACAGCCTCTCCTGGGCAGACCAATGGGG
AGGGCTCCTTGGAAGTGCTGGCAACCAGATTCCAGGGCTCCCTGAGGACACACCGTGACAGCCAGTCTTC
CCAGAGGTCTGCCTGCTTCAGCCCAGTCTCTCTCAGCCCCAGGCCTTGCAGCCCCTTCTCCACCCCACCC
CCTACCAGCCCAGTTGCCCTTTCTAAAGAGGATATGATTGGCTGTAGTTTCCAGAGTCTGACACACTCTC
CAGGCCTTGCTGCTGCTCACCACTTGACCTACCCTGGCCACCCCACCAGCCAACAGGCCGGCCACAGCAG
CCCAAGCGACTCCGCAGTGAGGGTGCTGCTCCATTCCCCAGGACGGCCCTCCAGCCCTAGGTTCAGCAGT
TTGGATCTGGAGGAAGACTCAGAGGTGTTCAAGATGCTGCAGGAGAACCGCCAGGGACGGGCCGCCCCAA
GGCAGTCCAGCTCTTTTCGACTCTTACAGGAAGCCTTGGAGGCTGAGGAGAGAGGTGGCACACCTGCCTT
TGTGCCCAGCTCGCTGAGCTCCCAGGCTTCCTTGCCCACCTCCAGGGCCTTGGCCACTCCACCCAAGCTC
CACACCTGTGAGAAATGCAGCGTCAACATCTCGAACCAGGCGGTCCGCATCCAGGAGGGGAGGTACCGAC
ACCCTGGCTGCTACACTTGCGCAGACTGTGGGCTGAACCTGAAGATGCGCGGCCACTTCTGGGTGGGCAA
TGAGTTGTACTGCGAGAAGCATGCCCGCCAGCGCTACTCTATGCCTGGAACTCTCAACTCTCGAGCCTGA

Translation (349 aa):
MALTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIR
QSASPLRLQLDRSQTASPGQTNGEGSLEVLATRFQGSLRTHRDSQSSQRSACFSPVSLSPRPCSPFSTPP
PTSPVALSKEDMIGCSFQSLTHSPGLAAAHHLTYPGHPTSQQAGHSSPSDSAVRVLLHSPGRPSSPRFSS
LDLEEDSEVFKMLQENRQGRAAPRQSSSFRLLQEALEAEERGGTPAFVPSSLSSQASLPTSRALATPPKL
HTCEKCSVNISNQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWVGNELYCEKHARQRYSMPGTLNSRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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