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Report for CCDS27872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27872.1 Public Mus musculus 15 Soat2 23 108 98 CCDS HistoryNCBI Gene:223920Re-query CCDS DB by CCDS ID:27872.1Re-query CCDS DB by GeneID:223920See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27872.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023806.13 ENSMUSP00000023806.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023806.13Link to Ensembl Protein Viewer:ENSMUSP00000023806.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023806Re-query CCDS DB by Protein ID:ENSMUSP00000023806
Original member Current member NCBI NM_146064.1 NP_666176.1 Accepted alive Link to Nucleotide Sequence:NM_146064.1Link to Protein Sequence:NP_666176.1Re-query CCDS DB by Nucleotide ID:NM_146064Re-query CCDS DB by Protein ID:NP_666176Link to BLAST:NP_666176.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666176.1 525 O88908 525 100% 0 0

Chromosomal Locations for CCDS 27872.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102150634 102150712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102151106 102151161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102153148 102153284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102153961 102154020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102154261 102154368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102156812 102157088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102157612 102157681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102158073 102158157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102158554 102158599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102158714 102158843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102160590 102160687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102161052 102161150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102162009 102162144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102162554 102162699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102162897 102162947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGCAGCCAAAGGTGCCCCAGCTTCGGAGGAGAGAAGGGCTGGGAGAGGAGCAGGAGAAGGGAGCCCGTG
GAGGAGAAGGGAACGCAAGGACACACGGAACCCCAGACTTGGTGCAATGGACTCGACATATGGAGGCTGT
GAAGACACAGTTTCTGGAGCAAGCACAGAGAGAGTTGGCAGAGCTGTTGGATCGGGCCCTATGGGAGGCT
ATGCAAGCTTACCCCAAACAAGACAGACCTCTTCCCTCCGCTGCCCCAGATTCTACAAGCAAGACCCAAG
AGTTACACCCTGGAAAACGGAAAGTTTTCATCACCCGCAAGTCACTGATCGATGAGCTAATGGAGGTGCA
ACATTTCCGAACCATCTACCACATGTTCATAGCGGGCCTATGCGTCCTGATCATCAGCACCCTGGCCATC
GACTTCATTGATGAGGGCAGGTTGATGCTGGAGTTTGACTTACTCCTCTTCAGCTTCGGACAGCTGCCCT
TGGCGCTGATGACCTGGGTTCCCATGTTCCTGTCTACGCTCCTAGTGCCCTACCAGACCCTGTGGCTGTG
GGCCAGGCCGCGCGCTGGGGGTGCCTGGATGCTGGGGGCCAGCCTGGGCTGCGTTCTGCTGGCTGCCCAC
GCTGTGGTGCTCTGCGTCCTGCCGGTGCACGTGTCAGTGAGGCATGAGCTTCCGCCCGCCTCGCGCTGCG
TGCTGGTCTTTGAGCAGGTCAGATTGCTGATGAAAAGCTACTCCTTCCTGAGAGAGACTGTGCCTGGGAT
CTTTTGTGTCAGAGGAGGAAAGGGCATCAGCCCCCCAAGTTTCTCCAGCTACCTCTACTTCCTCTTCTGC
CCTACACTTATCTACAGAGAGACATACCCCAGGACACCCAGCATCAGGTGGAACTATGTGGCCAAGAACT
TTGCCCAGGTCCTGGGCTGTTTGCTCTATGCCTGCTTCATCCTGGGCCGCCTCTGTGTCCCTGTCTTTGC
CAACATGAGCCGGGAACCCTTCAGCACCCGGGCTCTGCTGCTCTCCATCTTGCATGCCACGGGGCCAGGC
ATCTTCATGCTGCTCCTCATCTTCTTCGCCTTCCTGCACTGCTGGCTCAACGCCTTCGCCGAGATGCTGC
GGTTTGGAGACAGGATGTTCTACCGGGACTGGTGGAACTCGACTTCCTTCTCCAACTACTACCGCACCTG
GAACGTCGTGGTCCATGACTGGCTGTACAGCTATGTGTATCAAGATGGGCTGTGGCTCTTAGGCAGGCGG
GCTCGCGGGGTGGCCATGCTGGGAGTGTTCCTGGTGTCTGCGGTGGTTCATGAGTATATCTTCTGCTTCG
TCCTGGGGTTCTTCTACCCGGTCATGCTGATGCTATTCCTTGTTTTCGGGGGGCTGCTGAATTTCACCAT
GAACGACAGGCACACAGGTCCAGCCTGGAACATCCTGATGTGGACCTTTCTCTTCATGGGCCAGGGCATC
CAGGTCAGCCTATACTGCCAGGAGTGGTATGCTCGTCGACACTGTCCCCTGCCCCAGACAACATTCTGGG
GGATGGTGACACCCCGCTCTTGGTCCTGCCATCCCTAG

Translation (525 aa):
MQPKVPQLRRREGLGEEQEKGARGGEGNARTHGTPDLVQWTRHMEAVKTQFLEQAQRELAELLDRALWEA
MQAYPKQDRPLPSAAPDSTSKTQELHPGKRKVFITRKSLIDELMEVQHFRTIYHMFIAGLCVLIISTLAI
DFIDEGRLMLEFDLLLFSFGQLPLALMTWVPMFLSTLLVPYQTLWLWARPRAGGAWMLGASLGCVLLAAH
AVVLCVLPVHVSVRHELPPASRCVLVFEQVRLLMKSYSFLRETVPGIFCVRGGKGISPPSFSSYLYFLFC
PTLIYRETYPRTPSIRWNYVAKNFAQVLGCLLYACFILGRLCVPVFANMSREPFSTRALLLSILHATGPG
IFMLLLIFFAFLHCWLNAFAEMLRFGDRMFYRDWWNSTSFSNYYRTWNVVVHDWLYSYVYQDGLWLLGRR
ARGVAMLGVFLVSAVVHEYIFCFVLGFFYPVMLMLFLVFGGLLNFTMNDRHTGPAWNILMWTFLFMGQGI
QVSLYCQEWYARRHCPLPQTTFWGMVTPRSWSCHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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