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Report for CCDS21545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21545.1 Public Mus musculus 7 Or51a25 23 108 98 CCDS HistoryNCBI Gene:259116Re-query CCDS DB by CCDS ID:21545.1Re-query CCDS DB by GeneID:259116See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21545.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084816.3 ENSMUSP00000095820.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084816.3Link to Ensembl Protein Viewer:ENSMUSP00000095820.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000084816Re-query CCDS DB by Protein ID:ENSMUSP00000095820
Original member Current member EBI ENSMUST00000215657.1 ENSMUSP00000151100.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215657.1Link to Ensembl Protein Viewer:ENSMUSP00000151100.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215657Re-query CCDS DB by Protein ID:ENSMUSP00000151100
Original member Current member NCBI NM_147112.1 NP_667323.1 Accepted alive Link to Nucleotide Sequence:NM_147112.1Link to Protein Sequence:NP_667323.1Re-query CCDS DB by Nucleotide ID:NM_147112Re-query CCDS DB by Protein ID:NP_667323Link to BLAST:NP_667323.1

Chromosomal Locations for CCDS 21545.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102723532 102724488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGATCCCTTCTGGGCCATTCATCAACATCTCCTTCTTCCAGCCACAGTCTTTTCTCATGATTGGCATCC
CAGGACTAGAGTTTGCCCATGGCTGGATCTCCATCCCCTTCTCCTTCATGTACACTGTAGCACTCACTGG
AAACTGCCTCATCCTCCTGGCTGTGAGGAGGACACATAGCCTACACCAGCCCATGTACTACTTTCTGTCC
ATGCTAGCCCTAAGTGATGTGGGTCTCAGTTTATCCACATTGCCTTCCACCCTGGCTGTGCTCTGGTTTG
ACTATCGTTCCATCGACTTCAATGCCTGTCTTGTCCAGATGTTCTTCTTACACTCCTTCTCTGTGGTAGA
GTCCTCAGTCCTCTTGGCCATGTCATTTGACCGCTTTGTGGCTATCTCCAACCCACTGCGCTATGCATCT
GTCCTCACTAACAATGTCATCATCAGGATTGGGGTGGCCATTGTAGCTCGAGCCACCCTGTCCCTATTCC
CAGTGCCCTTCTTGCTGAAGAGACTGAACTACTGCCCTGGCAAGATCCTCCTGTCTCACTCATTCTGTTT
CCATGCTGATGTCATGAAGCTGGCCTGTGCTGACATTACTGTCAACATCCTATATGGACTCTATGTGGTT
CTGTCCACAGTGGGTGTAGACTCCTTGCTTATTGTCATGTCCTATTCCTTGATTCTTCACACAGTCATGG
GGCTAGCCTCTCCCAGGGAGCGTGTCCGGACCCTCAACACATGTGTTTCCCATATCTTGGCTGTCCTGGT
CTTCTACATTCCAGTCATAGGTGTCTCCATGATCCATCGTTTTGGAAAGCACCTGCCTCACATTGTTCAT
GCCCTGGTTGCGTATGTGTACCTTGTGGTGCCTCCTGTGCTCAACCCCATCATCTACAGTGTCAAGTCCA
AGCCCATCAGGGGAGCCATGTTCAAAGTTCTGAGAGGAAAAGACTAG

Translation (318 aa):
MIPSGPFINISFFQPQSFLMIGIPGLEFAHGWISIPFSFMYTVALTGNCLILLAVRRTHSLHQPMYYFLS
MLALSDVGLSLSTLPSTLAVLWFDYRSIDFNACLVQMFFLHSFSVVESSVLLAMSFDRFVAISNPLRYAS
VLTNNVIIRIGVAIVARATLSLFPVPFLLKRLNYCPGKILLSHSFCFHADVMKLACADITVNILYGLYVV
LSTVGVDSLLIVMSYSLILHTVMGLASPRERVRTLNTCVSHILAVLVFYIPVIGVSMIHRFGKHLPHIVH
ALVAYVYLVVPPVLNPIIYSVKSKPIRGAMFKVLRGKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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