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Report for CCDS21556.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21556.1 Public Mus musculus 7 Or51g2 23 108 98 CCDS HistoryNCBI Gene:259113Re-query CCDS DB by CCDS ID:21556.1Re-query CCDS DB by GeneID:259113See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21556.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051505.1 ENSMUSP00000059586.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051505.1Link to Ensembl Protein Viewer:ENSMUSP00000059586.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000051505Re-query CCDS DB by Protein ID:ENSMUSP00000059586
Original member Current member EBI ENSMUST00000214080.1 ENSMUSP00000148993.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214080.1Link to Ensembl Protein Viewer:ENSMUSP00000148993.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214080Re-query CCDS DB by Protein ID:ENSMUSP00000148993
Original member Current member EBI ENSMUST00000215237.1 ENSMUSP00000150712.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215237.1Link to Ensembl Protein Viewer:ENSMUSP00000150712.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215237Re-query CCDS DB by Protein ID:ENSMUSP00000150712
Original member Current member NCBI NM_147109.1 NP_667320.1 Accepted alive Link to Nucleotide Sequence:NM_147109.1Link to Protein Sequence:NP_667320.1Re-query CCDS DB by Nucleotide ID:NM_147109Re-query CCDS DB by Protein ID:NP_667320Link to BLAST:NP_667320.1

Chromosomal Locations for CCDS 21556.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102973052 102973990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGACTCCAGGACCCCTAGGAAATGGAAGCATGTCTTCTACCTTCTTGCTGAGTGGCATCCCTGGGCTGG
AGCACATGCATATCTGGATCTCCCTTCCACTCTGTCTCATGTACCTGGTTTCCATCCTGGGTAACTGCAC
AATCCTTTTTATAATTAAGACAGAGCCCTCACTCCATGAGCCCATGTACCTCTTCCTGTCCATGCTCGCT
CTGACTGACCTTGGTCTCTCTCTTTGTACCCTCCCTACAGTGCTAGGCATCTTTTGGGTGGGAGCACGAG
ACATTAGCCATGATGCTTGCTTTACCCAGCTCTTTTTCATCCACTGCTTGTCCTTCTTAGAATCCTCTGT
GCTTCTCTCTATGGCCTTTGATCGCTTTGTGGCTATCTGTCGTCCTTTGCACTATGCTTCCATCCTCACC
CACACAGTGATTGTCAGAATAGGTCTGGCCTCTCTGGGCCGTAGTGTTGCACTCATTTTCCCATTGCCTT
TCATGCTCAAACGGTTCCCTTACTGTGGCTCCCTAGTTCTCTCACATTCCTATTGTCTCCATCAAGAAGT
GATGAAACTGGCCTGTGCAGACATCAAGGCAAACAGCATTTATGGCATGTTCGTCATTGTTTCTACAGTG
GGAGTGGACTCTTTGCTCATCCTCTTCTCCTATGCACTTATTCTGCGCACCGTATTGTCCATTGCCTCAA
GGGCTGAAAGACTCAAAGCTCTCAATACATGCGTTTCACACATCTCTGCTGTGCTTCTGTTCTATACTCC
CATGATAGGATTGTCTGTAATCCACCGCTTTGGGAAACAGGCCCCCCATCTAGTTCAGGTGGTCATGGGC
TTTGTGTATCTCCTCTTCCCTCCTGTGATGAACCCTATTGTCTATAGTGTCAAGACCAAACAGATACGGG
ATAGGGTAGCCCATGCCTTTTGCAACTAG

Translation (312 aa):
MTPGPLGNGSMSSTFLLSGIPGLEHMHIWISLPLCLMYLVSILGNCTILFIIKTEPSLHEPMYLFLSMLA
LTDLGLSLCTLPTVLGIFWVGARDISHDACFTQLFFIHCLSFLESSVLLSMAFDRFVAICRPLHYASILT
HTVIVRIGLASLGRSVALIFPLPFMLKRFPYCGSLVLSHSYCLHQEVMKLACADIKANSIYGMFVIVSTV
GVDSLLILFSYALILRTVLSIASRAERLKALNTCVSHISAVLLFYTPMIGLSVIHRFGKQAPHLVQVVMG
FVYLLFPPVMNPIVYSVKTKQIRDRVAHAFCN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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