NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21625.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21625.1 Public Mus musculus 7 Or52n20 23 108 98 CCDS HistoryNCBI Gene:259052Re-query CCDS DB by CCDS ID:21625.1Re-query CCDS DB by GeneID:259052See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21625.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098170.1 ENSMUSP00000095772.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098170.1Link to Ensembl Protein Viewer:ENSMUSP00000095772.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000098170Re-query CCDS DB by Protein ID:ENSMUSP00000095772
Original member Current member EBI ENSMUST00000214986.1 ENSMUSP00000149939.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214986.1Link to Ensembl Protein Viewer:ENSMUSP00000149939.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214986Re-query CCDS DB by Protein ID:ENSMUSP00000149939
Original member Current member NCBI NM_147050.1 NP_667261.1 Accepted alive Link to Nucleotide Sequence:NM_147050.1Link to Protein Sequence:NP_667261.1Re-query CCDS DB by Nucleotide ID:NM_147050Re-query CCDS DB by Protein ID:NP_667261Link to BLAST:NP_667261.1

Chromosomal Locations for CCDS 21625.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 104670704 104671672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGCTCCTGCTGAATCAAACAGAGGTGACCCCAGTCTCATTTATTCTGAATGGAATCCCAGGCCTGGAAG
AAATGCACATCTGGATTTCCTTCCCATTCTGTTCTATGTATGTAATAGCTGTGGTAGGCAATTGTGGACT
CCTCTACCTCATCTTCTTTGAAGACAGCCTTCACAGGTCAATGTACTACTTCTTGGCTATGCTTTCCCTT
ACAGACCTTGTCATGTGCAGTGCTTCAATACCCAAAACTCTCTGTATCTTCTGGTTCTACATTAAGGAAA
TTAGCTTTACTGATTGTCTGGTCCAGATGTTCTTCATCCATACTTTCACAGCGATGGAGTCTGGGGTGCT
CATGCTCATGGCTCTGGACCGCTATGTAGCAATCTGCTACCCTCTGCACTACTCCACTATCCTCACCAAT
CCTGTCATTGCAAAAGCTGGCCTTGCTACATTCTTGAGAGCTGTGGTGCTCATCATTCCTTTGATTTTCA
TCACAAAGCATCTGCCCTTCTGCAGAAGCAATATATTAATACACCATACCTACTGTGACCAGTTGTCTGT
AGCCAAGGTCTCCTGTGGAAATATCAAGGTCAACATTGTCTATGGTCTGATGATTGCTCTCTTTATTGGG
GGCTTTGATATCTTGTGCATCACAGTCTCCTACACCATGATCCTGAAAGCAGTGGTCAGCTTATCTTCAG
CAGATGCTAGGCAGAAAGCTTTCAGCACCTGCACTGCCCACATCTGTGCCATTGTTTTCTCCTATAGCCC
AGCCTTCTTTTGTTTCTTTTCCCACCGCTTTGGGGGGCACATCATCCCTCCATCTTGCCTCATCATTGTG
GCTAACCTTTATCTGCTTTTGCCTCCCACTATGAACCCTGTGGTCTATGGAGTGAAAACCAAGCAGATAC
GAGACTGTGTCATAAGGATCTTTTCAGGTTCTAAGGACATCAAATCCCACAGCATATGA

Translation (322 aa):
MLLLNQTEVTPVSFILNGIPGLEEMHIWISFPFCSMYVIAVVGNCGLLYLIFFEDSLHRSMYYFLAMLSL
TDLVMCSASIPKTLCIFWFYIKEISFTDCLVQMFFIHTFTAMESGVLMLMALDRYVAICYPLHYSTILTN
PVIAKAGLATFLRAVVLIIPLIFITKHLPFCRSNILIHHTYCDQLSVAKVSCGNIKVNIVYGLMIALFIG
GFDILCITVSYTMILKAVVSLSSADARQKAFSTCTAHICAIVFSYSPAFFCFFSHRFGGHIIPPSCLIIV
ANLYLLLPPTMNPVVYGVKTKQIRDCVIRIFSGSKDIKSHSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH