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Report for CCDS16370.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16370.1 Public Mus musculus 2 Or4c121 23 108 98 CCDS HistoryNCBI Gene:258969Re-query CCDS DB by CCDS ID:16370.1Re-query CCDS DB by GeneID:258969See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16370.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099790.1 ENSMUSP00000097378.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099790.1Link to Ensembl Protein Viewer:ENSMUSP00000097378.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099790Re-query CCDS DB by Protein ID:ENSMUSP00000097378
Original member Current member EBI ENSMUST00000215562.1 ENSMUSP00000148951.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215562.1Link to Ensembl Protein Viewer:ENSMUSP00000148951.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215562Re-query CCDS DB by Protein ID:ENSMUSP00000148951
Original member Current member EBI ENSMUST00000215987.1 ENSMUSP00000148955.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215987.1Link to Ensembl Protein Viewer:ENSMUSP00000148955.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215987Re-query CCDS DB by Protein ID:ENSMUSP00000148955
Original member Current member EBI ENSMUST00000214709.1 ENSMUSP00000149647.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214709.1Link to Ensembl Protein Viewer:ENSMUSP00000149647.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214709Re-query CCDS DB by Protein ID:ENSMUSP00000149647
Original member Current member EBI ENSMUST00000216445.1 ENSMUSP00000150215.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216445.1Link to Ensembl Protein Viewer:ENSMUSP00000150215.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216445Re-query CCDS DB by Protein ID:ENSMUSP00000150215
Original member Current member EBI ENSMUST00000217601.1 ENSMUSP00000151063.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217601.1Link to Ensembl Protein Viewer:ENSMUSP00000151063.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217601Re-query CCDS DB by Protein ID:ENSMUSP00000151063
Original member Current member EBI ENSMUST00000220416.1 ENSMUSP00000151855.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220416.1Link to Ensembl Protein Viewer:ENSMUSP00000151855.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220416Re-query CCDS DB by Protein ID:ENSMUSP00000151855
Original member Current member NCBI NM_146967.1 NP_667178.1 Accepted alive Link to Nucleotide Sequence:NM_146967.1Link to Protein Sequence:NP_667178.1Re-query CCDS DB by Nucleotide ID:NM_146967Re-query CCDS DB by Protein ID:NP_667178Link to BLAST:NP_667178.1

Chromosomal Locations for CCDS 16370.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 89193100 89194032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGTTAAACCACAGTAGTGTCACTGAGTTCATTCTTCTTGGACTTTCACAGAACTCAAAAGTTGAGAAAG
TACTGTTTGTTATATTTTTGTTGATCTACCTTGCAACTATTGGGGGCAACATGATTATTGTAGTAACCAT
CATCTATAGCCCTGCACTGCTGGGCTCCCCAATGTACTTCTTCTTAATATTCCTGTCCTTTCTGGATGCT
TGCACTTCTTCCACTGTCACCCCCAAGATGATTGTAGACTTCTTCTATGAAAAGAAGACCATCTCCTTTG
AATGCTGCATGACACAACTGTTTGCTGTGCACTTCTTCACTGGGATGGAGGTGATTGTCCTTTCAGCCAT
GGCCTATGACCGCTATGTGGCCATTTGCAAGCCTCTTCACTACTCCTCCATCATGACCAGGAGACTCTGT
GGCATTTTGGTGATGTTGTCTTGGGCAGGAGGCTTCTTGCATTCTATCATACAAATCATCTTCACTTTGC
AGCTGCCCTTCTGTGGACCCAATGTCATTGATCATTACATGTGTGACTTGTTCCCATTACTGAAGCTTGC
CTGCACTGACACACACATATTTGTCATTTTAGTGTTTGCCAACAGTGGGTCTATCTGCATTATAATCTTC
TCTATTTTGCTTGTCTCCTATAGTGTCATCTTGTTCTCTCTGAGAGCCCACAGTTCTGAAGGGCGGCGTA
AAGCTCTCTCCACCTGTGGATCCCACATTACAGTTGTGCTTTTGTTTTTTGTGTCATGCATATTAATATA
TGCTCGACCTGCTGCCTTCTCTTCTGAAAAAAATGCACTTGTATTTGCCACAATCATAACACCACTTCTG
AATCCTATGGTATATACTTTCAGGAATAGGGAAATGAAGAATGCTATTAGGAAACTGTGGAAGAGATGGA
AAGTGGTTTCTGGTGACATTTAA

Translation (310 aa):
MLNHSSVTEFILLGLSQNSKVEKVLFVIFLLIYLATIGGNMIIVVTIIYSPALLGSPMYFFLIFLSFLDA
CTSSTVTPKMIVDFFYEKKTISFECCMTQLFAVHFFTGMEVIVLSAMAYDRYVAICKPLHYSSIMTRRLC
GILVMLSWAGGFLHSIIQIIFTLQLPFCGPNVIDHYMCDLFPLLKLACTDTHIFVILVFANSGSICIIIF
SILLVSYSVILFSLRAHSSEGRRKALSTCGSHITVVLLFFVSCILIYARPAAFSSEKNALVFATIITPLL
NPMVYTFRNREMKNAIRKLWKRWKVVSGDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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