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Report for CCDS24324.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24324.1 Public Mus musculus 10 Or10p1 23 108 98 CCDS HistoryNCBI Gene:258933Re-query CCDS DB by CCDS ID:24324.1Re-query CCDS DB by GeneID:258933See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24324.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037071.4 ENSMUSP00000040207.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037071.4Link to Ensembl Protein Viewer:ENSMUSP00000040207.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000037071Re-query CCDS DB by Protein ID:ENSMUSP00000040207
Original member Current member EBI ENSMUST00000214584.2 ENSMUSP00000150534.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214584.2Link to Ensembl Protein Viewer:ENSMUSP00000150534.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214584Re-query CCDS DB by Protein ID:ENSMUSP00000150534
Original member Current member NCBI NM_146931.1 NP_667142.1 Accepted alive Link to Nucleotide Sequence:NM_146931.1Link to Protein Sequence:NP_667142.1Re-query CCDS DB by Nucleotide ID:NM_146931Re-query CCDS DB by Protein ID:NP_667142Link to BLAST:NP_667142.1

Chromosomal Locations for CCDS 24324.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 129607547 129608479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGATGAGGAAAACCAAACTACAACAACTGAGTTTCTCCTACTGGGGTTCTCTGACCTCAGAGCCCTTC
AGGGGCCACTGTTCTGGTTGGTACTTCTTGTCTACCTGATAACCTTTCTGGGCAACTCACTGATCATCTT
TCTTACCCAAACCAGCCCTGTGCTGCACTCCCCCATGTATTTCTTCCTGCGCCATCTTTCCATGGTGGAG
CTTCTCTACACCACAGACATTGTGCCCAGAGTTCTGGCTGACTTGACCTCCTCACATCCCCAGGCCATCT
CCTTCAGGAGCTGTGCAGCCCAGATGTACTTCTTCATTGTCCTGGGTATCTCAGAGTGCTGTCTCCTCAC
AGCCATGGCCTATGACCGTTATGCAGCCATCTGTCAGCCCCTGCACTACTCTACCCTAATGAACCACCGG
GCCTGCATAGCCATGGTGGGAACTTCATGGATCATGGGCATCATCACAGCTACCACTCACTCTTCCCTCA
TCTTCACTCTGCCTTTCCCTAGCCGCCCCATCATCCCACACTTCCTCTGTGACATCCTGCCAGTACTGAG
GCTAGCAAGTGCTGGGAAGCACAGGAGTGAAATTTCTGTAATGACTGCCACAGTGGTCTTTATCATGATC
CCCTTCTCTCTGATAGTTACTTCTTATGCCCGCATCCTGGGAGCCATCCTGGCAATTGCTTCTAGCCAGA
GCCGCCGCAAGGTCTTCTCTACCTGCTCCTCCCACTTGCTTGTGGTCTCCCTCTTCTTCGGAACGGCCAG
CATCACATATATCAGACCCAGAGCAGGCTCTTCTGTCACCACAGACCGCATCCTTAGTCTCTTCTACACA
GTGGTCACACCCATGCTCAACCCCATCATCTATACCCTCCGGAACAAAGAGGTGATAGGGGCCCTAAAAC
ACATGAAAAGGCAGGTTCCCTAA

Translation (310 aa):
MDEENQTTTTEFLLLGFSDLRALQGPLFWLVLLVYLITFLGNSLIIFLTQTSPVLHSPMYFFLRHLSMVE
LLYTTDIVPRVLADLTSSHPQAISFRSCAAQMYFFIVLGISECCLLTAMAYDRYAAICQPLHYSTLMNHR
ACIAMVGTSWIMGIITATTHSSLIFTLPFPSRPIIPHFLCDILPVLRLASAGKHRSEISVMTATVVFIMI
PFSLIVTSYARILGAILAIASSQSRRKVFSTCSSHLLVVSLFFGTASITYIRPRAGSSVTTDRILSLFYT
VVTPMLNPIIYTLRNKEVIGALKHMKRQVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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