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Report for CCDS21717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21717.1 Public Mus musculus 7 Or5p76 23 108 98 CCDS HistoryNCBI Gene:258734Re-query CCDS DB by CCDS ID:21717.1Re-query CCDS DB by GeneID:258734See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21717.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078933.4 ENSMUSP00000077963.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078933.4Link to Ensembl Protein Viewer:ENSMUSP00000077963.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000078933Re-query CCDS DB by Protein ID:ENSMUSP00000077963
Original member Current member EBI ENSMUST00000216919.1 ENSMUSP00000151167.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216919.1Link to Ensembl Protein Viewer:ENSMUSP00000151167.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216919Re-query CCDS DB by Protein ID:ENSMUSP00000151167
Original member Current member NCBI NM_146739.1 NP_666950.1 Accepted alive Link to Nucleotide Sequence:NM_146739.1Link to Protein Sequence:NP_666950.1Re-query CCDS DB by Nucleotide ID:NM_146739Re-query CCDS DB by Protein ID:NP_666950Link to BLAST:NP_666950.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666950.1 314 Q8VG09 314 100% 0 0

Chromosomal Locations for CCDS 21717.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 108523004 108523948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGCTTTCCTGGAGGATGGGAACCACACTGCAGTGACAGGATTCATTTTATTGGGATTAACAGATGACC
CAGTCCTTAGAGTTGTCCTCTTTGTCATCATCTTGTGCATCTATCTGGTGACTGTGTCTGGGAACCTCAG
CACCATCCTTCTCATCAGAGTTTCTTCCCAGCTCCATCACCCCATGTACTTTTTTCTCAGCCACTTGGCT
TCTGCTGACATAGGCTATTCATCTTCTGTCACACCCAATATGCTTGTCAACTTCCTGGTGGAGAGAAACA
CCATCTCCTATCTAGGATGTGGCATCCAGCTTGGTTCAGCTGTTTTCTTTGGGACAGTTGAATGTTTCCT
TCTGGCTGCCATGGCTTATGACCGATTTATAGCAATTTGTAGCCCACTGCTTTATTCAAACAAAATGTCC
ACACAGGTTTGTGTCCAGCTGCTTGTAGGATCTTATATAGGGGGTTTTCTTAATGCCTCCTCCTTCACAC
TTTCCTTCTTTTCTCTTGTGTTTTGTGGACCAAACAGAGTCAATCACTTTTTCTGCGATTTTGCCCCATT
AGTAAAACTATCTTGTTCTGATGTCAGTGTCCCTGCAGTTGTTCCCTCATTCACAGCTGGCTCCATCATC
ATTGTGACCATATTTGTAATAGCTGTCTCCTACATCTACATCCTTATCACCATCCTGAAGATGCGCTCCA
CTGAGGGCCGACAGAAGGCTTTCTCTACCTGCACCTCCCACCTCACTGCAGTCACTCTTTTCTATGGGAC
CATCACATTCATTTATGTGATGCCCAAGTCCAGCTACTCCACAGACCAGAACAAGGTGGTATCTGTGTTC
TACATGGTGGTGGTCCCCATGTTGAACCCCCTCATCTACAGCCTCAGAAATAAAGAGATTAAGGGTGCTC
TGAAAAGACAGTTGGCTAAAAATACATTTTCTTAG

Translation (314 aa):
MAFLEDGNHTAVTGFILLGLTDDPVLRVVLFVIILCIYLVTVSGNLSTILLIRVSSQLHHPMYFFLSHLA
SADIGYSSSVTPNMLVNFLVERNTISYLGCGIQLGSAVFFGTVECFLLAAMAYDRFIAICSPLLYSNKMS
TQVCVQLLVGSYIGGFLNASSFTLSFFSLVFCGPNRVNHFFCDFAPLVKLSCSDVSVPAVVPSFTAGSII
IVTIFVIAVSYIYILITILKMRSTEGRQKAFSTCTSHLTAVTLFYGTITFIYVMPKSSYSTDQNKVVSVF
YMVVVPMLNPLIYSLRNKEIKGALKRQLAKNTFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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