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Report for CCDS25022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25022.1 Public Mus musculus 11 Or1r1 23 108 98 CCDS HistoryNCBI Gene:258705Re-query CCDS DB by CCDS ID:25022.1Re-query CCDS DB by GeneID:258705See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25022.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053874.1 ENSMUSP00000059548.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053874.1Link to Ensembl Protein Viewer:ENSMUSP00000059548.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000053874Re-query CCDS DB by Protein ID:ENSMUSP00000059548
Original member Current member EBI ENSMUST00000117510.3 ENSMUSP00000113005.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117510.3Link to Ensembl Protein Viewer:ENSMUSP00000113005.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117510Re-query CCDS DB by Protein ID:ENSMUSP00000113005
Original member Current member EBI ENSMUST00000214334.1 ENSMUSP00000149170.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214334.1Link to Ensembl Protein Viewer:ENSMUSP00000149170.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214334Re-query CCDS DB by Protein ID:ENSMUSP00000149170
Original member Current member NCBI NM_146710.1 NP_666921.1 Accepted alive Link to Nucleotide Sequence:NM_146710.1Link to Protein Sequence:NP_666921.1Re-query CCDS DB by Nucleotide ID:NM_146710Re-query CCDS DB by Protein ID:NP_666921Link to BLAST:NP_666921.1

Chromosomal Locations for CCDS 25022.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73983662 73984606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGCTGTGACCAACCTCACATACAAACCACAGTTCCAGCTCCTCGGCTTGATGGATGGCACAGATCCCC
ACCCGCTGCTGTTTCTTCTTTTCCTTAGCATTTACCTACTCAATGCCCTGGGCAATCTGAGCATGGTGGT
GCTGGTGAGGTCTGATGGGGCTCTGTGCTCCCCCATGTATTATTTCCTGGGTCACCTGAGCCTCGTGGAT
GTCTGCTTTACCACAGTCACTGTCCCCAGACTGCTGGCCACCTTGCTCCATCCTGGCCAGGCCATATCCT
TCCAGGCTTGTTTTGCCCAGATGTACTTCTTTGTAGCTCTGGGTATCACCGAGAGCTACCTTCTGGCAGC
CATGTCTTATGACCGTGCGGTGGCTGTGTGTAGACCGCTGCACTATGGTGCAGTCATGACACCCTGGCGC
TGCTTTTTGTTGGTGGCTGCATCCTGGGCTGTGGCCCATCTGCACTCTCTTCTACATACACTGCTCATCT
CTGCTCTCACCTACCCTCCCTCTGCCCCAGTGCGCCACTTCTTTTGTGACATGACTGTAATGCTGAGCTT
GGCAACCTCTGACACATCAGCTGCAGAGACTGCCATCTTCTCAGAGGGGCTAACAGTGGTGTTGACCCCT
CTGCTCCTCGTGTCCCTTTCCTATGCACGCATCCTTGTGGCAGTGCTTGGAATTCGGACCACAGGAGGCC
GGCACCGTGTCTTCTCCACCTGTGGGGCCCACCTGGTGGTAGTGTCACTTTTCTTTGGCTCAGTCCTCTC
CGTCTACTTCCGTCCATCATCTGCCTACTCAGCTCGTTATGACCGCATGGCCAGTGTGGTCTATGCGGTA
GTCACACCGACCTTGAACCCTTTTATCTACAGTCTTCGTAACAAAGAGGTCAAGAGTGCCCTAAAAAGGG
GTTTCAGATGGAGAGCAGCACCCCAAGATGAGTAA

Translation (314 aa):
MAVTNLTYKPQFQLLGLMDGTDPHPLLFLLFLSIYLLNALGNLSMVVLVRSDGALCSPMYYFLGHLSLVD
VCFTTVTVPRLLATLLHPGQAISFQACFAQMYFFVALGITESYLLAAMSYDRAVAVCRPLHYGAVMTPWR
CFLLVAASWAVAHLHSLLHTLLISALTYPPSAPVRHFFCDMTVMLSLATSDTSAAETAIFSEGLTVVLTP
LLLVSLSYARILVAVLGIRTTGGRHRVFSTCGAHLVVVSLFFGSVLSVYFRPSSAYSARYDRMASVVYAV
VTPTLNPFIYSLRNKEVKSALKRGFRWRAAPQDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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