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Report for CCDS29640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29640.1 Public Mus musculus 19 Or5b21 23 108 98 CCDS HistoryNCBI Gene:258697Re-query CCDS DB by CCDS ID:29640.1Re-query CCDS DB by GeneID:258697See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29640.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059675.3 ENSMUSP00000062460.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059675.3Link to Ensembl Protein Viewer:ENSMUSP00000062460.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000059675Re-query CCDS DB by Protein ID:ENSMUSP00000062460
Original member Current member EBI ENSMUST00000213606.1 ENSMUSP00000150212.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213606.1Link to Ensembl Protein Viewer:ENSMUSP00000150212.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213606Re-query CCDS DB by Protein ID:ENSMUSP00000150212
Original member Current member NCBI NM_146702.1 NP_666913.1 Accepted alive Link to Nucleotide Sequence:NM_146702.1Link to Protein Sequence:NP_666913.1Re-query CCDS DB by Nucleotide ID:NM_146702Re-query CCDS DB by Protein ID:NP_666913Link to BLAST:NP_666913.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666913.1 319 Q8VFX2 319 100% 0 0

Chromosomal Locations for CCDS 29640.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12861777 12862736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGACTTCAATGGAGAACATCACAGAAGTGACAGAATTCATCCTGCTGGGGTTGACAGATGACCCCAATC
TTCAGGTTCCTCTCCTCCTGATATTTTTATTCATCTACCTTGTCACTCTGATTGGAAATGGAGGGATGAT
GGTCATCATCTTCTCGGATTCCCACCTCCACACTCCCATGTACTTTTTCCTCAGTAACCTGTCCTTTGTA
GATCTGGGATACTCATCAGCTGTAGCTCCCAAGATGGTGGCTGCACTTCAGTCAGGGAACAAGGTCATCT
CCTATAATGGGTGTGCAGCTCAATTTTTCTTCTTCGTGGGGTTTGCCACTGTTGAGTGCTATCTTTTGGC
CTCCATGGCTTACGACCGCCATGCAGCAGTGTGTAGGCCTCTTCATTACACCACCACCATGACAACTGGT
GTGTGTACCATCCTAACCATTGGCTCTTACACCTGTGGCTTCCTTAATGCCTCAATCCATGCTGCAGATA
CCTTTAAACTCTCTTTCTGTGGTTCTAATAAGATAAATCATTTTTTCTGTGACATACCCCCACTCCTGGC
CCTTGCATGCTCCAGCACACACATCAGTAAATTGGTTGTCTTTTTTGTTGTGGGATTCAATGTCTTTTTC
ACTCTCTTGGTAATTATCATCTCATACTTCTTCATTTACATTGCTATTCAAAACATGAAGTCTTCTGAGG
GACGAAAGAAGGCTTTCTCCACTTGTGCTTCCCACCTCACTGCTGTGTCCATCTTCTATGGCACAATTAT
CTTCATGTACTTGCAGCCCAGTTCTGGTCAGTCCATGGACACAGACAAAATAGCATCTGTATTCTACACT
GTAGTGATTCCCATGTTGAACCCCTTGATCTACAGCCTCAGGAACAGAGAAGTGAAGAGTGCTCTATGGA
AAATACTCAACAGATTTTACCCTGCGTCTTTTAGTGTGAGTAGGAAGTAG

Translation (319 aa):
MTSMENITEVTEFILLGLTDDPNLQVPLLLIFLFIYLVTLIGNGGMMVIIFSDSHLHTPMYFFLSNLSFV
DLGYSSAVAPKMVAALQSGNKVISYNGCAAQFFFFVGFATVECYLLASMAYDRHAAVCRPLHYTTTMTTG
VCTILTIGSYTCGFLNASIHAADTFKLSFCGSNKINHFFCDIPPLLALACSSTHISKLVVFFVVGFNVFF
TLLVIIISYFFIYIAIQNMKSSEGRKKAFSTCASHLTAVSIFYGTIIFMYLQPSSGQSMDTDKIASVFYT
VVIPMLNPLIYSLRNREVKSALWKILNRFYPASFSVSRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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